miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 45151 0.66 0.780197
Target:  5'- uGGCGcGCCACCACCcGGGacUCgAGg -3'
miRNA:   3'- cCCGCuUGGUGGUGGcCCCaaGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 45930 0.66 0.759326
Target:  5'- gGGGUggcggucgcguccgGAACC-CCuCUGGGGUaggCCCGGa -3'
miRNA:   3'- -CCCG--------------CUUGGuGGuGGCCCCAa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 46611 0.66 0.780197
Target:  5'- gGGGCuacGACCACgGCCaGGacGGUUCCgCGGu -3'
miRNA:   3'- -CCCGc--UUGGUGgUGG-CC--CCAAGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 47076 0.68 0.663444
Target:  5'- gGGGCGAcAgCGCCGgugugguguccgucCCGGGGgUCCUGGu -3'
miRNA:   3'- -CCCGCU-UgGUGGU--------------GGCCCCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 48383 0.66 0.797817
Target:  5'- gGGGCGuGCCGCCgcgACCGcacGGGccCCCGc -3'
miRNA:   3'- -CCCGCuUGGUGG---UGGC---CCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 48971 0.71 0.481822
Target:  5'- gGGGUuucGCCACCgccccccaggccaGCCGGGGgUCCCAa -3'
miRNA:   3'- -CCCGcu-UGGUGG-------------UGGCCCCaAGGGUc -5'
5494 3' -59.7 NC_001798.1 + 51185 0.68 0.656552
Target:  5'- cGGGCGGcggcGCCcccCCGCCGGGcGUccuuuccgcgcCCCAGg -3'
miRNA:   3'- -CCCGCU----UGGu--GGUGGCCC-CAa----------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 52092 0.69 0.617074
Target:  5'- gGGGCGcaugacguacAUCGCCACCGGGGcucugcucgCCCGc -3'
miRNA:   3'- -CCCGCu---------UGGUGGUGGCCCCaa-------GGGUc -5'
5494 3' -59.7 NC_001798.1 + 52930 0.66 0.77029
Target:  5'- uGGGCGAcgaggagACCGCCGCCcuccGGGcgcacgugUCCgGGa -3'
miRNA:   3'- -CCCGCU-------UGGUGGUGGc---CCCa-------AGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 54369 0.71 0.519978
Target:  5'- cGGCGu-CCGgcCCACCGGGGggCCgCGGc -3'
miRNA:   3'- cCCGCuuGGU--GGUGGCCCCaaGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 55011 0.69 0.607213
Target:  5'- cGGCgGGGCCGCCcuGCCGGGaGacgcCCCGGa -3'
miRNA:   3'- cCCG-CUUGGUGG--UGGCCC-Caa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 56304 0.68 0.646691
Target:  5'- uGGGUGAGguaCACUACCGcGG-UCCCGGc -3'
miRNA:   3'- -CCCGCUUg--GUGGUGGCcCCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 57949 0.68 0.646691
Target:  5'- aGGGCGAaaucAUCACaCGCCGGuGGUaUUCGGg -3'
miRNA:   3'- -CCCGCU----UGGUG-GUGGCC-CCAaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 59753 0.66 0.797817
Target:  5'- gGGGUGccuCCGCUugguucCCGGcGGUUCCgGGa -3'
miRNA:   3'- -CCCGCuu-GGUGGu-----GGCC-CCAAGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 60883 0.66 0.765741
Target:  5'- gGGGCGGcgGCCgcACCGCCGGGaagaugagccaugccGcgacgcUCCCGGg -3'
miRNA:   3'- -CCCGCU--UGG--UGGUGGCCC---------------Ca-----AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 61827 0.67 0.752859
Target:  5'- cGGGCacGCCuucGCC-CCGGGGga-CCGGg -3'
miRNA:   3'- -CCCGcuUGG---UGGuGGCCCCaagGGUC- -5'
5494 3' -59.7 NC_001798.1 + 66024 0.67 0.715063
Target:  5'- aGGGCGAugUggcGCaUGCCGcGGGUcgCCCGGc -3'
miRNA:   3'- -CCCGCUugG---UG-GUGGC-CCCAa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 66378 0.83 0.098254
Target:  5'- cGGGCGGACCGCCGCaccaGGGGUUugaaCCCGu -3'
miRNA:   3'- -CCCGCUUGGUGGUGg---CCCCAA----GGGUc -5'
5494 3' -59.7 NC_001798.1 + 66812 0.71 0.47726
Target:  5'- cGGGUccgucgcgGAGCCcggcccggugccggcGCCcagGCCGGGGUUUCCGGg -3'
miRNA:   3'- -CCCG--------CUUGG---------------UGG---UGGCCCCAAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 67571 0.73 0.395896
Target:  5'- gGGGCG-ACCucggGCUcCCGGGGUUCCUg- -3'
miRNA:   3'- -CCCGCuUGG----UGGuGGCCCCAAGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.