miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 92501 0.68 0.666395
Target:  5'- cGGCG-GCCGCCACCuGGcc-CCCAGc -3'
miRNA:   3'- cCCGCuUGGUGGUGGcCCcaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 86874 0.7 0.529468
Target:  5'- cGGCGGucgcgcuuuuCCGCCGCCGGGaacCCCGGc -3'
miRNA:   3'- cCCGCUu---------GGUGGUGGCCCcaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 86271 0.66 0.780197
Target:  5'- gGGcGCGGGCgCACCGgCGGGGaaugCCUg- -3'
miRNA:   3'- -CC-CGCUUG-GUGGUgGCCCCaa--GGGuc -5'
5494 3' -59.7 NC_001798.1 + 85977 0.7 0.577761
Target:  5'- gGGGaguuCGAgGCCGCCGCCGGGGcgCUggcgCAGg -3'
miRNA:   3'- -CCC----GCU-UGGUGGUGGCCCCaaGG----GUC- -5'
5494 3' -59.7 NC_001798.1 + 85286 0.67 0.743538
Target:  5'- cGGGgGGGCgGggGCCGGGGUccgCCCGc -3'
miRNA:   3'- -CCCgCUUGgUggUGGCCCCAa--GGGUc -5'
5494 3' -59.7 NC_001798.1 + 85025 0.68 0.666395
Target:  5'- uGGCGAcguCCGCC-CCGGGGgUgCCGu -3'
miRNA:   3'- cCCGCUu--GGUGGuGGCCCCaAgGGUc -5'
5494 3' -59.7 NC_001798.1 + 84509 0.69 0.607213
Target:  5'- cGGGCGG-CCGCCGuaGGGcUUCCCc- -3'
miRNA:   3'- -CCCGCUuGGUGGUggCCCcAAGGGuc -5'
5494 3' -59.7 NC_001798.1 + 83761 0.67 0.715063
Target:  5'- -aGCcccGCCGCCagcaacagaagcGCCGGGGggCCCGGa -3'
miRNA:   3'- ccCGcu-UGGUGG------------UGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 82009 0.69 0.58755
Target:  5'- gGGGCG-ACCGCCGCCGcGGccgcCgCCAGa -3'
miRNA:   3'- -CCCGCuUGGUGGUGGC-CCcaa-G-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 79968 0.75 0.286057
Target:  5'- cGGCGGcgccgcguccGCCGCCGggcccCCGGGGgUCCCAGc -3'
miRNA:   3'- cCCGCU----------UGGUGGU-----GGCCCCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 79510 0.66 0.771197
Target:  5'- gGGGCGAGgcguauCUGCgCGCCGGcGGagaCCCGGg -3'
miRNA:   3'- -CCCGCUU------GGUG-GUGGCC-CCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 78329 0.67 0.747278
Target:  5'- cGGa-GGCCACCgcggagcugguccggACCGGGGUcacccugccgugUCCCAGc -3'
miRNA:   3'- cCCgcUUGGUGG---------------UGGCCCCA------------AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 78098 0.67 0.73318
Target:  5'- cGGGCGAcggguuuaucgACUACCACgaggccgUGGGGcgCCUGGc -3'
miRNA:   3'- -CCCGCU-----------UGGUGGUG-------GCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 76964 0.71 0.472719
Target:  5'- cGGGCGGACCuguggggGCUGCUGGGGcaguaCCGGg -3'
miRNA:   3'- -CCCGCUUGG-------UGGUGGCCCCaag--GGUC- -5'
5494 3' -59.7 NC_001798.1 + 76903 0.71 0.473626
Target:  5'- gGGGUGGACCgaccuggccgauGCCGuCCGGGGccccccCCCGGa -3'
miRNA:   3'- -CCCGCUUGG------------UGGU-GGCCCCaa----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 74882 0.67 0.702526
Target:  5'- cGGUGggUCGCCACCGGGcgcgcuauucuaccGgcuugCCCAa -3'
miRNA:   3'- cCCGCuuGGUGGUGGCCC--------------Caa---GGGUc -5'
5494 3' -59.7 NC_001798.1 + 74633 0.66 0.780197
Target:  5'- gGGGCcGACCGgccccccgaggcCCcCCGGGGggCCuCGGg -3'
miRNA:   3'- -CCCGcUUGGU------------GGuGGCCCCaaGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 73953 0.66 0.780197
Target:  5'- gGGGCGAguggacGCgCGCgGCCGcGGGcUCCgGGc -3'
miRNA:   3'- -CCCGCU------UG-GUGgUGGC-CCCaAGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 73223 0.69 0.59737
Target:  5'- cGGCGuuucggccuuCCGCCGgcCCGGGGgccCCCGGg -3'
miRNA:   3'- cCCGCuu--------GGUGGU--GGCCCCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 71234 0.75 0.286057
Target:  5'- aGGgGAGCCGCCcuccGCCGGGG--CCCAGc -3'
miRNA:   3'- cCCgCUUGGUGG----UGGCCCCaaGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.