miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 120337 0.66 0.797817
Target:  5'- -uGCGAAaCGCC-CCGGGGUgcagCgCCAGc -3'
miRNA:   3'- ccCGCUUgGUGGuGGCCCCAa---G-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 5898 0.66 0.797817
Target:  5'- cGGGCu--CCGCC-CCGaGGcGggCCCGGa -3'
miRNA:   3'- -CCCGcuuGGUGGuGGC-CC-CaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 28992 0.66 0.797817
Target:  5'- gGGGCGGcgccggccaaccGCgCGCCGCCGcGcGggCCCGGa -3'
miRNA:   3'- -CCCGCU------------UG-GUGGUGGC-CcCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 106097 0.66 0.797817
Target:  5'- cGGCGAcccggcgccGCgACCGCCGGGucugcggUUCCGGc -3'
miRNA:   3'- cCCGCU---------UGgUGGUGGCCCca-----AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 35006 0.65 0.805568
Target:  5'- gGGGCGcACCucggcgGCCAagccccggcccgcCCGGGGgUCCCc- -3'
miRNA:   3'- -CCCGCuUGG------UGGU-------------GGCCCCaAGGGuc -5'
5494 3' -59.7 NC_001798.1 + 2610 0.66 0.789073
Target:  5'- gGGcGCGGGgCGCCGcCCGGcGGcgCCCuGg -3'
miRNA:   3'- -CC-CGCUUgGUGGU-GGCC-CCaaGGGuC- -5'
5494 3' -59.7 NC_001798.1 + 22356 0.66 0.786423
Target:  5'- gGGGCgGGGCCGcgcauaaugcgguuCCACCuGGGGgcggaacCCCGGc -3'
miRNA:   3'- -CCCG-CUUGGU--------------GGUGG-CCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 36317 0.66 0.771197
Target:  5'- gGGcGCGGGCCGggGCCGGGGcUCgCUGGu -3'
miRNA:   3'- -CC-CGCUUGGUggUGGCCCCaAG-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 79510 0.66 0.771197
Target:  5'- gGGGCGAGgcguauCUGCgCGCCGGcGGagaCCCGGg -3'
miRNA:   3'- -CCCGCUU------GGUG-GUGGCC-CCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 139009 0.66 0.771197
Target:  5'- cGGCGAuAUCGCCcucCCGGGcGUUCCg-- -3'
miRNA:   3'- cCCGCU-UGGUGGu--GGCCC-CAAGGguc -5'
5494 3' -59.7 NC_001798.1 + 43478 0.66 0.772102
Target:  5'- gGGGCGGGCgugaggGCCGCCGGGGcauacgugcgcgcgCgCAGg -3'
miRNA:   3'- -CCCGCUUGg-----UGGUGGCCCCaa------------GgGUC- -5'
5494 3' -59.7 NC_001798.1 + 45151 0.66 0.780197
Target:  5'- uGGCGcGCCACCACCcGGGacUCgAGg -3'
miRNA:   3'- cCCGCuUGGUGGUGGcCCCaaGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 74633 0.66 0.780197
Target:  5'- gGGGCcGACCGgccccccgaggcCCcCCGGGGggCCuCGGg -3'
miRNA:   3'- -CCCGcUUGGU------------GGuGGCCCCaaGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 86271 0.66 0.780197
Target:  5'- gGGcGCGGGCgCACCGgCGGGGaaugCCUg- -3'
miRNA:   3'- -CC-CGCUUG-GUGGUgGCCCCaa--GGGuc -5'
5494 3' -59.7 NC_001798.1 + 3834 0.66 0.780197
Target:  5'- cGGGCGccCC-CCagagGCCGGGGcggcugucgCCCAGc -3'
miRNA:   3'- -CCCGCuuGGuGG----UGGCCCCaa-------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 46611 0.66 0.780197
Target:  5'- gGGGCuacGACCACgGCCaGGacGGUUCCgCGGu -3'
miRNA:   3'- -CCCGc--UUGGUGgUGG-CC--CCAAGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 73953 0.66 0.780197
Target:  5'- gGGGCGAguggacGCgCGCgGCCGcGGGcUCCgGGc -3'
miRNA:   3'- -CCCGCU------UG-GUGgUGGC-CCCaAGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 128878 0.66 0.780197
Target:  5'- uGGCGcGGCgAUCGCCGGaGGcgUUCCGGg -3'
miRNA:   3'- cCCGC-UUGgUGGUGGCC-CCa-AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 5928 0.66 0.783762
Target:  5'- gGGGCGGGCCGuuCCucgcgcacauaaaggGCCGGcg-UCCCGGu -3'
miRNA:   3'- -CCCGCUUGGU--GG---------------UGGCCccaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 127851 0.66 0.785537
Target:  5'- uGGGCcccgccccgccCCACCccgccccacgucACCGGGGgcCCCGGg -3'
miRNA:   3'- -CCCGcuu--------GGUGG------------UGGCCCCaaGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.