Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5494 | 5' | -56.6 | NC_001798.1 | + | 43011 | 0.66 | 0.886029 |
Target: 5'- cGGCCAGGccgcCCGGgGggaGCgCGggGCc -3' miRNA: 3'- -CCGGUCCua--GGCCgUaa-CG-GCuuCGu -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 83839 | 0.66 | 0.890793 |
Target: 5'- gGGCCGguccccguccgggcGGcgCUGGCGggcCCGAGGCGg -3' miRNA: 3'- -CCGGU--------------CCuaGGCCGUaacGGCUUCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 8789 | 0.66 | 0.892801 |
Target: 5'- uGCCGGGA-CgGGCGagGCCGcgGGGUAa -3' miRNA: 3'- cCGGUCCUaGgCCGUaaCGGC--UUCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 8881 | 0.66 | 0.892801 |
Target: 5'- cGGaaGGGcgCUGGCGgaggGCgGAGGCGa -3' miRNA: 3'- -CCggUCCuaGGCCGUaa--CGgCUUCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 30775 | 0.66 | 0.892801 |
Target: 5'- cGGCCGugcGGG-CCGGCAcgGCCGuGGa- -3' miRNA: 3'- -CCGGU---CCUaGGCCGUaaCGGCuUCgu -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 64514 | 0.66 | 0.871816 |
Target: 5'- uGGgCGGGGUCCaggcaaGGCAggGCCuGGGCc -3' miRNA: 3'- -CCgGUCCUAGG------CCGUaaCGGcUUCGu -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 56249 | 0.66 | 0.871816 |
Target: 5'- cGGCCGGGc-CCGGCc---CCGGAGUu -3' miRNA: 3'- -CCGGUCCuaGGCCGuaacGGCUUCGu -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 1481 | 0.66 | 0.855969 |
Target: 5'- cGCCGGGcgCCauGGCGUcGCCcgcgcccGAGGCGg -3' miRNA: 3'- cCGGUCCuaGG--CCGUAaCGG-------CUUCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 66226 | 0.66 | 0.856745 |
Target: 5'- gGGCCAGGAUCauuagcugGGCcucgUGUucgCGAAGCc -3' miRNA: 3'- -CCGGUCCUAGg-------CCGua--ACG---GCUUCGu -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 19866 | 0.66 | 0.856745 |
Target: 5'- aGGCCAGaGcGUUCGGCGgaGCUGGuaucGGCGa -3' miRNA: 3'- -CCGGUC-C-UAGGCCGUaaCGGCU----UCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 85297 | 0.66 | 0.856745 |
Target: 5'- gGGCCGGGGUCCGcccGCGgcccGCCc--GCAg -3' miRNA: 3'- -CCGGUCCUAGGC---CGUaa--CGGcuuCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 95200 | 0.66 | 0.856745 |
Target: 5'- aGGCCGGGAaCUGGgcCAgccUGCUGGgcGGCAa -3' miRNA: 3'- -CCGGUCCUaGGCC--GUa--ACGGCU--UCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 107877 | 0.66 | 0.856745 |
Target: 5'- gGGCCAGGG-CUGGCA---CCGuaucAGCAc -3' miRNA: 3'- -CCGGUCCUaGGCCGUaacGGCu---UCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 35538 | 0.66 | 0.856745 |
Target: 5'- cGGCC-GGcgCgGgGCGUUGCCGGcccGGCc -3' miRNA: 3'- -CCGGuCCuaGgC-CGUAACGGCU---UCGu -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 6544 | 0.66 | 0.864385 |
Target: 5'- gGGCCGGGGggaCGGgGggacggGCCGggGgGa -3' miRNA: 3'- -CCGGUCCUag-GCCgUaa----CGGCuuCgU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 6586 | 0.66 | 0.864385 |
Target: 5'- gGGCCGGGGggaCGGgGggacggGCCGggGgGa -3' miRNA: 3'- -CCGGUCCUag-GCCgUaa----CGGCuuCgU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 76850 | 0.66 | 0.864385 |
Target: 5'- gGGCUaaAGGcguGUCCGGCcgUGCU--GGCGa -3' miRNA: 3'- -CCGG--UCC---UAGGCCGuaACGGcuUCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 126263 | 0.66 | 0.864385 |
Target: 5'- cGCCGGGcGUCCGGac--GCCcAAGCGg -3' miRNA: 3'- cCGGUCC-UAGGCCguaaCGGcUUCGU- -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 4889 | 0.66 | 0.871816 |
Target: 5'- cGGCU-GGAUCCGGagau-CCGggGCc -3' miRNA: 3'- -CCGGuCCUAGGCCguaacGGCuuCGu -5' |
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5494 | 5' | -56.6 | NC_001798.1 | + | 12326 | 0.66 | 0.871816 |
Target: 5'- cGGCCGGGcAUaCCGGgAUcggacggGUCGAGGUg -3' miRNA: 3'- -CCGGUCC-UA-GGCCgUAa------CGGCUUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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