miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 3' -62.7 NC_001798.1 + 149247 0.68 0.511763
Target:  5'- -cGGGGGCGUCg--CCgGCCGGcgcGGGCg -3'
miRNA:   3'- guCCUCCGCAGgcaGGgCGGCC---UCUG- -5'
5495 3' -62.7 NC_001798.1 + 32251 0.68 0.502535
Target:  5'- uGGGAGcgucGCGUCCGcgUCCggCGCUGGGGAg -3'
miRNA:   3'- gUCCUC----CGCAGGC--AGG--GCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 81430 0.68 0.493381
Target:  5'- gAGGAgcuGGCGUCCGaCgaCGCCGGcGGCc -3'
miRNA:   3'- gUCCU---CCGCAGGCaGg-GCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 15917 0.68 0.493381
Target:  5'- aAGGGGGCGUacggaCCGUCaucuagggCC-CCGGGGGCc -3'
miRNA:   3'- gUCCUCCGCA-----GGCAG--------GGcGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 2980 0.68 0.493381
Target:  5'- gCGGcGGGGCGgCCGgCCCGCgggccccgggcgCGGGGGCg -3'
miRNA:   3'- -GUC-CUCCGCaGGCaGGGCG------------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 36111 0.68 0.485208
Target:  5'- gGGGGGGCccggcugcgucucgCCGcgaUCCCGCCGGugGGGCg -3'
miRNA:   3'- gUCCUCCGca------------GGC---AGGGCGGCC--UCUG- -5'
5495 3' -62.7 NC_001798.1 + 51240 0.68 0.484303
Target:  5'- cCAGGAGccaGUCCGUUCgcggaCGCCGG-GACa -3'
miRNA:   3'- -GUCCUCcg-CAGGCAGG-----GCGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 150652 0.68 0.484303
Target:  5'- gCGGGGGGCGUCCugcccUCCGCCGccgcGGCg -3'
miRNA:   3'- -GUCCUCCGCAGGca---GGGCGGCcu--CUG- -5'
5495 3' -62.7 NC_001798.1 + 9150 0.68 0.484303
Target:  5'- gCGGGcgcGGCG-CCGcCCgCGCCGGGGGg -3'
miRNA:   3'- -GUCCu--CCGCaGGCaGG-GCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 1510 0.69 0.475307
Target:  5'- gAGGcGGCGgcccggCCGUCCagCGCCGGGaGCa -3'
miRNA:   3'- gUCCuCCGCa-----GGCAGG--GCGGCCUcUG- -5'
5495 3' -62.7 NC_001798.1 + 137681 0.69 0.448834
Target:  5'- aAGGAGGCGaUCGcCCCGCUaGAGuACg -3'
miRNA:   3'- gUCCUCCGCaGGCaGGGCGGcCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 2541 0.69 0.440192
Target:  5'- gCGGGGGGCG-CgGccCCCGCgGGAGGg -3'
miRNA:   3'- -GUCCUCCGCaGgCa-GGGCGgCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 36038 0.69 0.431646
Target:  5'- uGGGGGGUggcggcggugGUCggCGUgCUGCCGGAGGCu -3'
miRNA:   3'- gUCCUCCG----------CAG--GCAgGGCGGCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 29514 0.7 0.423197
Target:  5'- gAGGGGGgGauucccucccUCCGccCCCGCCGGGGcGCg -3'
miRNA:   3'- gUCCUCCgC----------AGGCa-GGGCGGCCUC-UG- -5'
5495 3' -62.7 NC_001798.1 + 88057 0.7 0.423197
Target:  5'- gGGGGGGCGggcUCGUCCC-CUGG-GGCg -3'
miRNA:   3'- gUCCUCCGCa--GGCAGGGcGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 41440 0.7 0.423197
Target:  5'- gCGGGcgugGGGgGUCCauGcCCCGCCGGGGGg -3'
miRNA:   3'- -GUCC----UCCgCAGG--CaGGGCGGCCUCUg -5'
5495 3' -62.7 NC_001798.1 + 45474 0.7 0.423197
Target:  5'- gAGGuuGCGUCgGUCCCagucacccacGCCGGcGACa -3'
miRNA:   3'- gUCCucCGCAGgCAGGG----------CGGCCuCUG- -5'
5495 3' -62.7 NC_001798.1 + 2579 0.7 0.398458
Target:  5'- gCGGGGGGCGUCCG-CgCgGCUcuucuucgGGGGGCg -3'
miRNA:   3'- -GUCCUCCGCAGGCaG-GgCGG--------CCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 150556 0.7 0.390421
Target:  5'- aAGGAGaGCGgcCCGgggCCCGCggggcggcgCGGAGACg -3'
miRNA:   3'- gUCCUC-CGCa-GGCa--GGGCG---------GCCUCUG- -5'
5495 3' -62.7 NC_001798.1 + 37304 0.7 0.390421
Target:  5'- uGGGAGGCGaCC-UCCCGUCGGGc-- -3'
miRNA:   3'- gUCCUCCGCaGGcAGGGCGGCCUcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.