miRNA display CGI


Results 41 - 60 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 2845 0.66 0.839229
Target:  5'- cGGcGCGCaCGGC---GGCCACGGcGGCc -3'
miRNA:   3'- aCCaUGCG-GUCGugcUCGGUGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 6057 0.66 0.839229
Target:  5'- ---gACGCCGGCgGCGAGC---GGGGCa -3'
miRNA:   3'- accaUGCGGUCG-UGCUCGgugCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 21959 0.66 0.839229
Target:  5'- cGGaGCGCgGGaugaCGCGGGCCcCG-GGCa -3'
miRNA:   3'- aCCaUGCGgUC----GUGCUCGGuGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 27986 0.66 0.839229
Target:  5'- cGGcGCuCCAGC-CGuGCCGCGccccGGCg -3'
miRNA:   3'- aCCaUGcGGUCGuGCuCGGUGCu---CCG- -5'
5496 3' -58.3 NC_001798.1 + 149457 0.66 0.839229
Target:  5'- gGGUGCGgCGGCuccacGCGggGGCCGCGGcccGCa -3'
miRNA:   3'- aCCAUGCgGUCG-----UGC--UCGGUGCUc--CG- -5'
5496 3' -58.3 NC_001798.1 + 152049 0.66 0.831091
Target:  5'- cGGgggGCGgC-GCACGGcCCACGGGGg -3'
miRNA:   3'- aCCa--UGCgGuCGUGCUcGGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 135204 0.66 0.831091
Target:  5'- cUGGc-CGCCcuCGCGGGCCuCGGGGa -3'
miRNA:   3'- -ACCauGCGGucGUGCUCGGuGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 71178 0.66 0.822778
Target:  5'- cUGaGUGCGUCGGCGCuGGCCAucuucCGuccGGCc -3'
miRNA:   3'- -AC-CAUGCGGUCGUGcUCGGU-----GCu--CCG- -5'
5496 3' -58.3 NC_001798.1 + 3898 0.66 0.822778
Target:  5'- cGGgGgGCCGGCccCGGGCCAC--GGCu -3'
miRNA:   3'- aCCaUgCGGUCGu-GCUCGGUGcuCCG- -5'
5496 3' -58.3 NC_001798.1 + 25497 0.66 0.822778
Target:  5'- gGGcccgcUGCGCC-GCGCGgcGGCCugGAuGCg -3'
miRNA:   3'- aCC-----AUGCGGuCGUGC--UCGGugCUcCG- -5'
5496 3' -58.3 NC_001798.1 + 28807 0.66 0.822778
Target:  5'- gGGUccucCGCCGcCGCGGGCC-CG-GGCc -3'
miRNA:   3'- aCCAu---GCGGUcGUGCUCGGuGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 31772 0.66 0.822778
Target:  5'- aGGcGCGaCCGacgcGCGCGGGUCGgGAGGg -3'
miRNA:   3'- aCCaUGC-GGU----CGUGCUCGGUgCUCCg -5'
5496 3' -58.3 NC_001798.1 + 39472 0.66 0.822778
Target:  5'- aGGggGgGCCuGGCGCGuGCCuCGuGGCc -3'
miRNA:   3'- aCCa-UgCGG-UCGUGCuCGGuGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 119379 0.66 0.822778
Target:  5'- cUGGU-CGCCuGGCugGcGCaCGCG-GGCc -3'
miRNA:   3'- -ACCAuGCGG-UCGugCuCG-GUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 4079 0.66 0.822778
Target:  5'- cGGU-CGCC-GCGgGGGuCCGggcCGGGGCg -3'
miRNA:   3'- aCCAuGCGGuCGUgCUC-GGU---GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 86113 0.66 0.827786
Target:  5'- cGG-ACGCCcGCcgcgccgcggucaGCGAGuccugggaagcgcaCCGCGGGGCg -3'
miRNA:   3'- aCCaUGCGGuCG-------------UGCUC--------------GGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 3669 0.66 0.831091
Target:  5'- cGG-GCGCCAcGCGCGGGuUCugGAGcCa -3'
miRNA:   3'- aCCaUGCGGU-CGUGCUC-GGugCUCcG- -5'
5496 3' -58.3 NC_001798.1 + 111223 0.66 0.831091
Target:  5'- cGGUcccggcCGCCAGCGCGucgcggaacAGCC-CGuucauGGCa -3'
miRNA:   3'- aCCAu-----GCGGUCGUGC---------UCGGuGCu----CCG- -5'
5496 3' -58.3 NC_001798.1 + 26400 0.66 0.831091
Target:  5'- cGG-GCGCU-GCuCGAGCC-CGAcGGCg -3'
miRNA:   3'- aCCaUGCGGuCGuGCUCGGuGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 108597 0.66 0.831091
Target:  5'- cGGccGCGCCGGacCGCGAGgggcuuacguucCCGCGGGGa -3'
miRNA:   3'- aCCa-UGCGGUC--GUGCUC------------GGUGCUCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.