Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5497 | 3' | -59.5 | NC_001798.1 | + | 12893 | 0.71 | 0.480969 |
Target: 5'- -gUGCUGGUGUaCGGgggcUUGGGGCCGUGc -3' miRNA: 3'- ggACGACCACG-GCUa---GACCCUGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 24804 | 0.71 | 0.471838 |
Target: 5'- --cGCUGGUGCUGAUgCgccugcgcgGGGACCuGCGc -3' miRNA: 3'- ggaCGACCACGGCUA-Ga--------CCCUGG-CGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 35468 | 0.69 | 0.635564 |
Target: 5'- gUCUGCUGGcccgcgGCCcGUCUGcuGGcCCGCGg -3' miRNA: 3'- -GGACGACCa-----CGGcUAGAC--CCuGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 40119 | 0.68 | 0.645477 |
Target: 5'- gUUGUaGGUcGCCGGggCUGGGAUgGCGg -3' miRNA: 3'- gGACGaCCA-CGGCUa-GACCCUGgCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 42152 | 0.67 | 0.742771 |
Target: 5'- gCUGUggaGGacGCgGAUCUcccgcGGGGCCGCGg -3' miRNA: 3'- gGACGa--CCa-CGgCUAGA-----CCCUGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 43661 | 0.66 | 0.761407 |
Target: 5'- uCCgUGCUGGccGCgGggCUGGGGUCGUGg -3' miRNA: 3'- -GG-ACGACCa-CGgCuaGACCCUGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 44903 | 0.67 | 0.752139 |
Target: 5'- cCCUGCUcgGGUGCUGugcggUUGGGgaaCGCGc -3' miRNA: 3'- -GGACGA--CCACGGCua---GACCCug-GCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 45253 | 0.66 | 0.770568 |
Target: 5'- uCCUGCagaUGuacaUGUCGGUg-GGGGCCGCGg -3' miRNA: 3'- -GGACG---ACc---ACGGCUAgaCCCUGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 50091 | 0.69 | 0.625648 |
Target: 5'- uCCUGC-GGagGCCGggCUGGuGgcGCCGCGc -3' miRNA: 3'- -GGACGaCCa-CGGCuaGACC-C--UGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 51804 | 0.66 | 0.788533 |
Target: 5'- uCgUGCgGGUGgCGAUCaacgggUGGGuCUGCGg -3' miRNA: 3'- -GgACGaCCACgGCUAG------ACCCuGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 52870 | 0.66 | 0.788533 |
Target: 5'- uCCgUGCUGGgGCCGc---GGGuCCGCGc -3' miRNA: 3'- -GG-ACGACCaCGGCuagaCCCuGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 53600 | 0.7 | 0.547049 |
Target: 5'- gCUGCUGGUGCgCGccccguUCaagagcGGGGCCGCc -3' miRNA: 3'- gGACGACCACG-GCu-----AGa-----CCCUGGCGc -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 56531 | 0.67 | 0.755858 |
Target: 5'- --gGC-GGUGCCGGggcgcccgcacgaugUCUGGGAC-GCGa -3' miRNA: 3'- ggaCGaCCACGGCU---------------AGACCCUGgCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 58770 | 0.69 | 0.635564 |
Target: 5'- cCCccagGGUGCCGAcaaaCaGGGGCCGCGg -3' miRNA: 3'- -GGacgaCCACGGCUa---GaCCCUGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 59563 | 0.68 | 0.665266 |
Target: 5'- --gGCUGGggcucgcgucGCCGGUCUGGaGGUCGCGa -3' miRNA: 3'- ggaCGACCa---------CGGCUAGACC-CUGGCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 65482 | 0.69 | 0.625648 |
Target: 5'- -aUGCUGGUGucCCGGUCgaacaGGGACCagGUGa -3' miRNA: 3'- ggACGACCAC--GGCUAGa----CCCUGG--CGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 68775 | 0.7 | 0.527826 |
Target: 5'- gCCUGCccgGGUgGCCGGUguguguggccucCUGGGGuCCGCu -3' miRNA: 3'- -GGACGa--CCA-CGGCUA------------GACCCU-GGCGc -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 72042 | 0.76 | 0.271478 |
Target: 5'- cCCUGCgGGUGCUGGcCUGGG-CgCGCGa -3' miRNA: 3'- -GGACGaCCACGGCUaGACCCuG-GCGC- -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 90738 | 0.67 | 0.742771 |
Target: 5'- aCUGCaGGUGCCGAUCcaccuCCGCc -3' miRNA: 3'- gGACGaCCACGGCUAGacccuGGCGc -5' |
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5497 | 3' | -59.5 | NC_001798.1 | + | 95218 | 0.66 | 0.802528 |
Target: 5'- gCCUGCUGGgcggcaaaaacgcgUGCCcgcugcuGAUCUuuGACCGCa -3' miRNA: 3'- -GGACGACC--------------ACGG-------CUAGAccCUGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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