miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5497 3' -59.5 NC_001798.1 + 58770 0.69 0.635564
Target:  5'- cCCccagGGUGCCGAcaaaCaGGGGCCGCGg -3'
miRNA:   3'- -GGacgaCCACGGCUa---GaCCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 35468 0.69 0.635564
Target:  5'- gUCUGCUGGcccgcgGCCcGUCUGcuGGcCCGCGg -3'
miRNA:   3'- -GGACGACCa-----CGGcUAGAC--CCuGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 116242 0.69 0.625648
Target:  5'- cCCggcGCUGcUGCCGccccucGUgUGGGACUGCGa -3'
miRNA:   3'- -GGa--CGACcACGGC------UAgACCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 65482 0.69 0.625648
Target:  5'- -aUGCUGGUGucCCGGUCgaacaGGGACCagGUGa -3'
miRNA:   3'- ggACGACCAC--GGCUAGa----CCCUGG--CGC- -5'
5497 3' -59.5 NC_001798.1 + 50091 0.69 0.625648
Target:  5'- uCCUGC-GGagGCCGggCUGGuGgcGCCGCGc -3'
miRNA:   3'- -GGACGaCCa-CGGCuaGACC-C--UGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 150217 0.69 0.605838
Target:  5'- -gUGUUGGUGCCGcgg-GGGACCcCGg -3'
miRNA:   3'- ggACGACCACGGCuagaCCCUGGcGC- -5'
5497 3' -59.5 NC_001798.1 + 127638 0.7 0.547049
Target:  5'- gCUGCUGGUGCUGGUCUc---CCGCc -3'
miRNA:   3'- gGACGACCACGGCUAGAcccuGGCGc -5'
5497 3' -59.5 NC_001798.1 + 53600 0.7 0.547049
Target:  5'- gCUGCUGGUGCgCGccccguUCaagagcGGGGCCGCc -3'
miRNA:   3'- gGACGACCACG-GCu-----AGa-----CCCUGGCGc -5'
5497 3' -59.5 NC_001798.1 + 68775 0.7 0.527826
Target:  5'- gCCUGCccgGGUgGCCGGUguguguggccucCUGGGGuCCGCu -3'
miRNA:   3'- -GGACGa--CCA-CGGCUA------------GACCCU-GGCGc -5'
5497 3' -59.5 NC_001798.1 + 12893 0.71 0.480969
Target:  5'- -gUGCUGGUGUaCGGgggcUUGGGGCCGUGc -3'
miRNA:   3'- ggACGACCACG-GCUa---GACCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 24804 0.71 0.471838
Target:  5'- --cGCUGGUGCUGAUgCgccugcgcgGGGACCuGCGc -3'
miRNA:   3'- ggaCGACCACGGCUA-Ga--------CCCUGG-CGC- -5'
5497 3' -59.5 NC_001798.1 + 116499 0.74 0.339479
Target:  5'- aCgUGCUGGUGCCGGccuucUCgcgGGGgcgcugcugcACCGCGg -3'
miRNA:   3'- -GgACGACCACGGCU-----AGa--CCC----------UGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 72042 0.76 0.271478
Target:  5'- cCCUGCgGGUGCUGGcCUGGG-CgCGCGa -3'
miRNA:   3'- -GGACGaCCACGGCUaGACCCuG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.