miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5497 5' -52.8 NC_001798.1 + 150847 0.66 0.983353
Target:  5'- --gGGGcGCCGG-UCGggUcgCGGCGGg -3'
miRNA:   3'- aagCUCaUGGUCuAGCuuGa-GCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 149660 0.66 0.983353
Target:  5'- -cCGGGcGCCGGGUCGcgggccccgGGCUCGG-GGc -3'
miRNA:   3'- aaGCUCaUGGUCUAGC---------UUGAGCCgCC- -5'
5497 5' -52.8 NC_001798.1 + 55725 0.66 0.983353
Target:  5'- gUCaGAGcgGCCAGGU---GCUUGGCGGc -3'
miRNA:   3'- aAG-CUCa-UGGUCUAgcuUGAGCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 137701 0.66 0.98316
Target:  5'- --aGAGUACgAGAUCGAcguuuccugcccuGCUUGuuGCGGu -3'
miRNA:   3'- aagCUCAUGgUCUAGCU-------------UGAGC--CGCC- -5'
5497 5' -52.8 NC_001798.1 + 11369 0.66 0.981342
Target:  5'- gUUUGGGUG--GGAUCGcAGCUCGGCu- -3'
miRNA:   3'- -AAGCUCAUggUCUAGC-UUGAGCCGcc -5'
5497 5' -52.8 NC_001798.1 + 116311 0.66 0.979155
Target:  5'- -cCGAGacUGCCGGAUUGAcg-CGGgGGg -3'
miRNA:   3'- aaGCUC--AUGGUCUAGCUugaGCCgCC- -5'
5497 5' -52.8 NC_001798.1 + 2471 0.66 0.974219
Target:  5'- gUCGGGgcCCucggCGGGC-CGGCGGg -3'
miRNA:   3'- aAGCUCauGGucuaGCUUGaGCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 80525 0.67 0.971455
Target:  5'- cUgGAGUcugGCCAGAcgcUCGGcC-CGGCGGg -3'
miRNA:   3'- aAgCUCA---UGGUCU---AGCUuGaGCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 91552 0.67 0.968484
Target:  5'- gUUCGAGaGCCAGugugUGGugUCcGCGGg -3'
miRNA:   3'- -AAGCUCaUGGUCua--GCUugAGcCGCC- -5'
5497 5' -52.8 NC_001798.1 + 105346 0.67 0.9653
Target:  5'- aUCGGGcguauCCGGcgcucgauGUCGAcgggcaGCUCGGCGGc -3'
miRNA:   3'- aAGCUCau---GGUC--------UAGCU------UGAGCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 103016 0.67 0.958267
Target:  5'- -gCGcccgGCCAGcgCGAGCUCGGCc- -3'
miRNA:   3'- aaGCuca-UGGUCuaGCUUGAGCCGcc -5'
5497 5' -52.8 NC_001798.1 + 32008 0.67 0.958267
Target:  5'- -cCGGGccCCGGAcUCGGACUCgGGCGa -3'
miRNA:   3'- aaGCUCauGGUCU-AGCUUGAG-CCGCc -5'
5497 5' -52.8 NC_001798.1 + 152401 0.67 0.958267
Target:  5'- cUCGcAGUGCCGGGgugCGAAUgCGGCc- -3'
miRNA:   3'- aAGC-UCAUGGUCUa--GCUUGaGCCGcc -5'
5497 5' -52.8 NC_001798.1 + 56896 0.68 0.950315
Target:  5'- cUCGA--ACCAGA-CGAACUcCGcGCGGu -3'
miRNA:   3'- aAGCUcaUGGUCUaGCUUGA-GC-CGCC- -5'
5497 5' -52.8 NC_001798.1 + 19860 0.69 0.926229
Target:  5'- -gCGGGUagGCCAGAgCG--UUCGGCGGa -3'
miRNA:   3'- aaGCUCA--UGGUCUaGCuuGAGCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 134272 0.69 0.914877
Target:  5'- cUgGAGcGCCAGA-CGGGC-CGGUGGg -3'
miRNA:   3'- aAgCUCaUGGUCUaGCUUGaGCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 27294 0.7 0.867584
Target:  5'- --gGGGcUGCCg---CGAGCUCGGCGGg -3'
miRNA:   3'- aagCUC-AUGGucuaGCUUGAGCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 4087 0.71 0.859917
Target:  5'- -gCGGGgguccggGCCGGggCGGGCUCGGCccuGGg -3'
miRNA:   3'- aaGCUCa------UGGUCuaGCUUGAGCCG---CC- -5'
5497 5' -52.8 NC_001798.1 + 26932 0.72 0.800713
Target:  5'- gUCGGGcggGCgGGGUCGGGCg-GGCGGg -3'
miRNA:   3'- aAGCUCa--UGgUCUAGCUUGagCCGCC- -5'
5497 5' -52.8 NC_001798.1 + 6920 0.74 0.713794
Target:  5'- --gGuGUGCUAGAUCGAACgagCGGCaGGa -3'
miRNA:   3'- aagCuCAUGGUCUAGCUUGa--GCCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.