miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5498 3' -62.8 NC_001798.1 + 121 0.67 0.574347
Target:  5'- -cCGUCCCUCCCccgGaGcCGGCCGCUc -3'
miRNA:   3'- cuGCGGGGAGGGa--CaCaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 159 0.66 0.632607
Target:  5'- -cCGCCCCUCCCcccg-CGcGCCGCgGg -3'
miRNA:   3'- cuGCGGGGAGGGacacaGC-CGGUGgC- -5'
5498 3' -62.8 NC_001798.1 + 422 0.66 0.613119
Target:  5'- cGGCaGCCCCUCCCccccgCGcGCCACgGg -3'
miRNA:   3'- -CUG-CGGGGAGGGacacaGC-CGGUGgC- -5'
5498 3' -62.8 NC_001798.1 + 465 0.66 0.632607
Target:  5'- --gGCCgCCUCCCccg--CGGCCGCCu -3'
miRNA:   3'- cugCGG-GGAGGGacacaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 516 0.68 0.493418
Target:  5'- -cCGCCCCUCCCcccgcgcccgCGGCC-CCGa -3'
miRNA:   3'- cuGCGGGGAGGGacaca-----GCCGGuGGC- -5'
5498 3' -62.8 NC_001798.1 + 7870 0.67 0.583999
Target:  5'- -uCGCCgCUguggCCCUGgcgGaCGGCCGCCa -3'
miRNA:   3'- cuGCGG-GGa---GGGACa--CaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 23346 0.68 0.47174
Target:  5'- cGGCGCgCCC-CCCgccgGcGcUCGGCCGCCu -3'
miRNA:   3'- -CUGCG-GGGaGGGa---CaC-AGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 23927 0.72 0.2997
Target:  5'- gGGCGCCCCggcgCCC-GUGUgGG-CGCCGa -3'
miRNA:   3'- -CUGCGGGGa---GGGaCACAgCCgGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 24703 0.66 0.593682
Target:  5'- cGCGCCCCcgcgCCCgGggcccgcgGgcgCGGCCGCCc -3'
miRNA:   3'- cUGCGGGGa---GGGaCa-------Ca--GCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 25134 0.7 0.379238
Target:  5'- gGACGCCCCccgCCCcg---CGGCCGCCc -3'
miRNA:   3'- -CUGCGGGGa--GGGacacaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 28521 0.68 0.489773
Target:  5'- uGACGCCCCUccgacCCCcGUGUCuccCCGCCc -3'
miRNA:   3'- -CUGCGGGGA-----GGGaCACAGcc-GGUGGc -5'
5498 3' -62.8 NC_001798.1 + 35752 0.66 0.632607
Target:  5'- -cCGCCCaCUCCCcgc-UCGGCCucuCCGg -3'
miRNA:   3'- cuGCGGG-GAGGGacacAGCCGGu--GGC- -5'
5498 3' -62.8 NC_001798.1 + 49023 0.71 0.334168
Target:  5'- -cCGCCCCUCCgCUGUac--GCCACCGg -3'
miRNA:   3'- cuGCGGGGAGG-GACAcagcCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 54560 0.69 0.445339
Target:  5'- cGGgGUCCCgagCCCUGcGcCGGCCgGCCGg -3'
miRNA:   3'- -CUgCGGGGa--GGGACaCaGCCGG-UGGC- -5'
5498 3' -62.8 NC_001798.1 + 62591 0.72 0.293146
Target:  5'- cGACGCCCCggaggCCCUGgacUGGCUGCCc -3'
miRNA:   3'- -CUGCGGGGa----GGGACacaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 71864 0.71 0.334168
Target:  5'- cACGCCCCcucgguUCaCCUGgccgCGGCCACCa -3'
miRNA:   3'- cUGCGGGG------AG-GGACaca-GCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 77239 0.67 0.564733
Target:  5'- uGGCGCCCUggcggaCgCgGUGUCGGCC-CUGg -3'
miRNA:   3'- -CUGCGGGGa-----GgGaCACAGCCGGuGGC- -5'
5498 3' -62.8 NC_001798.1 + 78274 0.72 0.2997
Target:  5'- -gUGCCCCUggaCCUGg--CGGCCGCCGc -3'
miRNA:   3'- cuGCGGGGAg--GGACacaGCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 78831 0.73 0.26205
Target:  5'- cGACgGCCCCggcCCCUGgcgCGGCaCGCCGg -3'
miRNA:   3'- -CUG-CGGGGa--GGGACacaGCCG-GUGGC- -5'
5498 3' -62.8 NC_001798.1 + 81785 0.66 0.613119
Target:  5'- -cCGCCCCcCCCgagggGUGgCGuCCGCCGg -3'
miRNA:   3'- cuGCGGGGaGGGa----CACaGCcGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.