Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5498 | 3' | -62.8 | NC_001798.1 | + | 87984 | 0.67 | 0.545637 |
Target: 5'- gGACGCgCCUCCCgGgggGUCGGCaugcgaCGg -3' miRNA: 3'- -CUGCGgGGAGGGaCa--CAGCCGgug---GC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 139334 | 0.68 | 0.508121 |
Target: 5'- cGGCGCCCgCgcgCgCUGUG-CGGCCAUgGc -3' miRNA: 3'- -CUGCGGG-Ga--GgGACACaGCCGGUGgC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 128308 | 0.68 | 0.49891 |
Target: 5'- cGCGCCCC-CCC---GUCcGCCGCCGa -3' miRNA: 3'- cUGCGGGGaGGGacaCAGcCGGUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 150158 | 0.68 | 0.49891 |
Target: 5'- cGCGCCUCUUCCgggGgcgGGCCGCCGc -3' miRNA: 3'- cUGCGGGGAGGGacaCag-CCGGUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 516 | 0.68 | 0.493418 |
Target: 5'- -cCGCCCCUCCCcccgcgcccgCGGCC-CCGa -3' miRNA: 3'- cuGCGGGGAGGGacaca-----GCCGGuGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 28521 | 0.68 | 0.489773 |
Target: 5'- uGACGCCCCUccgacCCCcGUGUCuccCCGCCc -3' miRNA: 3'- -CUGCGGGGA-----GGGaCACAGcc-GGUGGc -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 88295 | 0.68 | 0.489773 |
Target: 5'- gGAUGUCCCUCuCCgg-GUCGGUgaugCGCCGa -3' miRNA: 3'- -CUGCGGGGAG-GGacaCAGCCG----GUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 23346 | 0.68 | 0.47174 |
Target: 5'- cGGCGCgCCC-CCCgccgGcGcUCGGCCGCCu -3' miRNA: 3'- -CUGCG-GGGaGGGa---CaC-AGCCGGUGGc -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 54560 | 0.69 | 0.445339 |
Target: 5'- cGGgGUCCCgagCCCUGcGcCGGCCgGCCGg -3' miRNA: 3'- -CUgCGGGGa--GGGACaCaGCCGG-UGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 113507 | 0.69 | 0.436723 |
Target: 5'- --gGCCCUgugcgCCCUgGUGgCGGCCGCCc -3' miRNA: 3'- cugCGGGGa----GGGA-CACaGCCGGUGGc -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 92351 | 0.7 | 0.411467 |
Target: 5'- cGCGCCCCUCauc--GUCGGCCugACCGu -3' miRNA: 3'- cUGCGGGGAGggacaCAGCCGG--UGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 102339 | 0.7 | 0.411467 |
Target: 5'- cGAC-CCCCggaUCCC-GUGgucuccggCGGCCGCCGg -3' miRNA: 3'- -CUGcGGGG---AGGGaCACa-------GCCGGUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 25134 | 0.7 | 0.379238 |
Target: 5'- gGACGCCCCccgCCCcg---CGGCCGCCc -3' miRNA: 3'- -CUGCGGGGa--GGGacacaGCCGGUGGc -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 111746 | 0.71 | 0.3414 |
Target: 5'- cGCGCCCCcggCCCcgGUccCGGCCAUCGg -3' miRNA: 3'- cUGCGGGGa--GGGa-CAcaGCCGGUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 71864 | 0.71 | 0.334168 |
Target: 5'- cACGCCCCcucgguUCaCCUGgccgCGGCCACCa -3' miRNA: 3'- cUGCGGGG------AG-GGACaca-GCCGGUGGc -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 49023 | 0.71 | 0.334168 |
Target: 5'- -cCGCCCCUCCgCUGUac--GCCACCGg -3' miRNA: 3'- cuGCGGGGAGG-GACAcagcCGGUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 78274 | 0.72 | 0.2997 |
Target: 5'- -gUGCCCCUggaCCUGg--CGGCCGCCGc -3' miRNA: 3'- cuGCGGGGAg--GGACacaGCCGGUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 23927 | 0.72 | 0.2997 |
Target: 5'- gGGCGCCCCggcgCCC-GUGUgGG-CGCCGa -3' miRNA: 3'- -CUGCGGGGa---GGGaCACAgCCgGUGGC- -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 62591 | 0.72 | 0.293146 |
Target: 5'- cGACGCCCCggaggCCCUGgacUGGCUGCCc -3' miRNA: 3'- -CUGCGGGGa----GGGACacaGCCGGUGGc -5' |
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5498 | 3' | -62.8 | NC_001798.1 | + | 78831 | 0.73 | 0.26205 |
Target: 5'- cGACgGCCCCggcCCCUGgcgCGGCaCGCCGg -3' miRNA: 3'- -CUG-CGGGGa--GGGACacaGCCG-GUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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