Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 97576 | 0.67 | 0.858466 |
Target: 5'- -aCGGggagcgCGGCCCcgagccagGGGCGCaGGGGCCGGa -3' miRNA: 3'- gaGUCa-----GCUGGG--------UUCGCG-CCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 66885 | 0.67 | 0.873311 |
Target: 5'- gCUUGGgaaaGGCCaCGGGgGCGGGGCCGu -3' miRNA: 3'- -GAGUCag--CUGG-GUUCgCGCCUUGGCu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 77259 | 0.67 | 0.880418 |
Target: 5'- ---uGUCGGCCCuGGGCGCGGccGCCc- -3' miRNA: 3'- gaguCAGCUGGG-UUCGCGCCu-UGGcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 132130 | 0.66 | 0.893977 |
Target: 5'- -gCAGgCGGCCCu-GCGCcgccgGGGGCCGGc -3' miRNA: 3'- gaGUCaGCUGGGuuCGCG-----CCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 24567 | 0.66 | 0.893977 |
Target: 5'- -gCGG-CGGCCgGcGCGCGGAGgCGGg -3' miRNA: 3'- gaGUCaGCUGGgUuCGCGCCUUgGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 115539 | 0.66 | 0.893977 |
Target: 5'- -cCGGcCGGCCCcGGCGCGGAcauGCa-- -3' miRNA: 3'- gaGUCaGCUGGGuUCGCGCCU---UGgcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 103048 | 0.66 | 0.893977 |
Target: 5'- cCUCGcGUCGcACCCccucGCGCGucGCCGGg -3' miRNA: 3'- -GAGU-CAGC-UGGGuu--CGCGCcuUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 32295 | 0.66 | 0.923897 |
Target: 5'- cCUCccUCGGCCCccGCGCugcugcgccgcgGGGGCCGAg -3' miRNA: 3'- -GAGucAGCUGGGuuCGCG------------CCUUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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