Results 121 - 140 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5499 | 5' | -60.8 | NC_001798.1 | + | 58656 | 0.69 | 0.539021 |
Target: 5'- -cGGCGGCGGUUGUC-CCgagGCCCGCc -3' miRNA: 3'- cuUUGCCGUCAGCGGaGGgg-CGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 138598 | 0.69 | 0.558296 |
Target: 5'- ----aGGCAcUCGCCgCgCUGCCCGCu -3' miRNA: 3'- cuuugCCGUcAGCGGaGgGGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 50952 | 0.69 | 0.558296 |
Target: 5'- gGAGGCGcGCcuccacccGGUC-CCaugCCCCGUCCGCg -3' miRNA: 3'- -CUUUGC-CG--------UCAGcGGa--GGGGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 18463 | 0.69 | 0.552492 |
Target: 5'- aGAAGCGGCAguuuGUCGacacaccccccacuaCC-CCCCGCCCc- -3' miRNA: 3'- -CUUUGCCGU----CAGC---------------GGaGGGGCGGGcg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 48384 | 0.69 | 0.552492 |
Target: 5'- ----gGGCGuGcCGCCgcgaccgcacgggcCCCCGCCCGCu -3' miRNA: 3'- cuuugCCGU-CaGCGGa-------------GGGGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 43125 | 0.69 | 0.548632 |
Target: 5'- ---cCGGCGGgcgCGCgUCCCgCGUCaCGCg -3' miRNA: 3'- cuuuGCCGUCa--GCGgAGGG-GCGG-GCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 102325 | 0.69 | 0.548632 |
Target: 5'- -cGGCGGCGcuUCGCCgacCCCCGgauCCCGUg -3' miRNA: 3'- cuUUGCCGUc-AGCGGa--GGGGC---GGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 34856 | 0.69 | 0.548632 |
Target: 5'- cGGGCGGgGGaCGCCU-UCCGCCCGg -3' miRNA: 3'- cUUUGCCgUCaGCGGAgGGGCGGGCg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 306 | 0.69 | 0.548632 |
Target: 5'- aAGACGcCAGUCGCa-CCaCCGCUCGCc -3' miRNA: 3'- cUUUGCcGUCAGCGgaGG-GGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 84889 | 0.69 | 0.548632 |
Target: 5'- cAGACGGCcG-CGUC-CCCCGCgCCGUc -3' miRNA: 3'- cUUUGCCGuCaGCGGaGGGGCG-GGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 28785 | 0.69 | 0.547669 |
Target: 5'- gGAGGCGGCGG-CGgcggcgcgcggguCCUCCgCCG-CCGCg -3' miRNA: 3'- -CUUUGCCGUCaGC-------------GGAGG-GGCgGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 122480 | 0.69 | 0.546706 |
Target: 5'- cAGACGGCGcugcugcGUCGCUUUCCCGCgcucgagggacccCUGCg -3' miRNA: 3'- cUUUGCCGU-------CAGCGGAGGGGCG-------------GGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 129577 | 0.69 | 0.539021 |
Target: 5'- -cGACGGCggggaGGUCGUCUCgcugaCCGCCCa- -3' miRNA: 3'- cuUUGCCG-----UCAGCGGAGg----GGCGGGcg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 14794 | 0.7 | 0.491931 |
Target: 5'- ---uCGGguGcgcguaUCGCCUgcgCCCCGCCCGg -3' miRNA: 3'- cuuuGCCguC------AGCGGA---GGGGCGGGCg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 55133 | 0.7 | 0.491931 |
Target: 5'- cGGGACuaaGCcuGUCGCCcaUgCCCGCCCGCc -3' miRNA: 3'- -CUUUGc--CGu-CAGCGG--AgGGGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 69076 | 0.7 | 0.491931 |
Target: 5'- --cGCGcGCAGcCGCuCUCggCCCGCCCGg -3' miRNA: 3'- cuuUGC-CGUCaGCG-GAG--GGGCGGGCg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 107128 | 0.7 | 0.491931 |
Target: 5'- ---cCGGCAcccuaUCGCCUCCCUGCugugcuacccggCCGCg -3' miRNA: 3'- cuuuGCCGUc----AGCGGAGGGGCG------------GGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 115584 | 0.7 | 0.501205 |
Target: 5'- -uGGCGGCAG-CGCCUCgCCCacgGCCgGg -3' miRNA: 3'- cuUUGCCGUCaGCGGAG-GGG---CGGgCg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 139292 | 0.7 | 0.501205 |
Target: 5'- gGggGCGcauaGCGccgcGUCGCCgCCCCGCguCCGCa -3' miRNA: 3'- -CuuUGC----CGU----CAGCGGaGGGGCG--GGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 153832 | 0.7 | 0.482736 |
Target: 5'- -cGGCGuGCGGggccuccggCGCCUUCCC-CCCGCc -3' miRNA: 3'- cuUUGC-CGUCa--------GCGGAGGGGcGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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