miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 2805 0.69 0.510556
Target:  5'- --cGCGGCAG-CGCCgggCCCaggGCCCcgGCg -3'
miRNA:   3'- cuuUGCCGUCaGCGGa--GGGg--CGGG--CG- -5'
5499 5' -60.8 NC_001798.1 + 74979 0.69 0.529468
Target:  5'- cGAGA-GGCc--CGCCcccaaggCCCCGCCCGCc -3'
miRNA:   3'- -CUUUgCCGucaGCGGa------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 37626 0.69 0.529468
Target:  5'- ---uUGGCGGUaaGCUUCCCCccuCCCGCg -3'
miRNA:   3'- cuuuGCCGUCAg-CGGAGGGGc--GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24730 0.69 0.535193
Target:  5'- --cGCGGCcGcccCGCCgcacgccgacgcgCCCCGCCUGCg -3'
miRNA:   3'- cuuUGCCGuCa--GCGGa------------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 88 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 152627 0.69 0.519978
Target:  5'- cAGAUGGgAGUCcccCCggcgCCCCGCCgGCg -3'
miRNA:   3'- cUUUGCCgUCAGc--GGa---GGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 154426 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 121474 0.69 0.529468
Target:  5'- cGGGCgGGCuGuUCGUCUCCCUGCCgGUc -3'
miRNA:   3'- cUUUG-CCGuC-AGCGGAGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 31390 0.69 0.529468
Target:  5'- cGGAgGGCAGgaCGCC-CCCCGCgagacagccCCGCg -3'
miRNA:   3'- cUUUgCCGUCa-GCGGaGGGGCG---------GGCG- -5'
5499 5' -60.8 NC_001798.1 + 136004 0.69 0.529468
Target:  5'- gGggGCGGggaguCGGUCgGCgUCCCCGuggaucuguaCCCGCg -3'
miRNA:   3'- -CuuUGCC-----GUCAG-CGgAGGGGC----------GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 153081 0.69 0.519978
Target:  5'- cGGAGCGGCGGggcggCGCCgggCCCuCGCggauauauaCGCg -3'
miRNA:   3'- -CUUUGCCGUCa----GCGGa--GGG-GCGg--------GCG- -5'
5499 5' -60.8 NC_001798.1 + 25233 0.68 0.577761
Target:  5'- ---cCGGCc--CGCCgagggCCCCGaCCCGCa -3'
miRNA:   3'- cuuuGCCGucaGCGGa----GGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 145391 0.68 0.577761
Target:  5'- aGggGCGacGCGGggaaagCGCgC-CCCCGCCCGg -3'
miRNA:   3'- -CuuUGC--CGUCa-----GCG-GaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 118883 0.68 0.577761
Target:  5'- -cAACGGgGaucccGUCaGCCUCguCCCGCCCGUc -3'
miRNA:   3'- cuUUGCCgU-----CAG-CGGAG--GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 82195 0.68 0.576784
Target:  5'- -cGGCGGCAGUgcCGCCUucuccgggccuugCCCC-CCCGa -3'
miRNA:   3'- cuUUGCCGUCA--GCGGA-------------GGGGcGGGCg -5'
5499 5' -60.8 NC_001798.1 + 92499 0.68 0.568007
Target:  5'- --cACGGCGGcCGCCaCCUgGCCCccaGCa -3'
miRNA:   3'- cuuUGCCGUCaGCGGaGGGgCGGG---CG- -5'
5499 5' -60.8 NC_001798.1 + 54665 0.68 0.568007
Target:  5'- ---cCGGCAGcCGCggcgCgCCCGCUCGCg -3'
miRNA:   3'- cuuuGCCGUCaGCGga--G-GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 28960 0.68 0.577761
Target:  5'- ---cCGGCGccgcccCGCCgCUCCGCCCGCc -3'
miRNA:   3'- cuuuGCCGUca----GCGGaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 150966 0.68 0.58657
Target:  5'- aGAGACGGgagccccCGGUuagUGCCcgacCCCCGCCCGa -3'
miRNA:   3'- -CUUUGCC-------GUCA---GCGGa---GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 78641 0.68 0.58755
Target:  5'- ----aGGUGGUCGCCgUCCCgGCgaCCGUg -3'
miRNA:   3'- cuuugCCGUCAGCGG-AGGGgCG--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.