miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 22195 0.71 0.429441
Target:  5'- cGGAAgGGCAGgggaGCgagCCCGCCCGCg -3'
miRNA:   3'- -CUUUgCCGUCag--CGgagGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 96168 0.71 0.429441
Target:  5'- --cAUGGCGGcCGCgC-CCCCGgCCGCg -3'
miRNA:   3'- cuuUGCCGUCaGCG-GaGGGGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 98496 0.71 0.438086
Target:  5'- cGGGCGGCGGgagcgacgCGCC-CCCguagGCCCGCc -3'
miRNA:   3'- cUUUGCCGUCa-------GCGGaGGGg---CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 138227 0.71 0.441571
Target:  5'- -cGACGGCGGgggugucgaucaggUGCCcCCCCGCCuCGUc -3'
miRNA:   3'- cuUUGCCGUCa-------------GCGGaGGGGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 49854 0.71 0.445073
Target:  5'- -cGGCGGCGGaggaacccggggCGCCccucacgaCCCCGCCCGUc -3'
miRNA:   3'- cuUUGCCGUCa-----------GCGGa-------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 153009 0.71 0.446829
Target:  5'- ----gGGCGGUCGCCggggcggagUCCggGCCCGCg -3'
miRNA:   3'- cuuugCCGUCAGCGG---------AGGggCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 23345 0.71 0.446829
Target:  5'- ---cCGGCg--CGCC-CCCCGCCgGCg -3'
miRNA:   3'- cuuuGCCGucaGCGGaGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 27609 0.71 0.446829
Target:  5'- gGggGCGcGCGGggcugcccUGCCg-CCCGCCCGCc -3'
miRNA:   3'- -CuuUGC-CGUCa-------GCGGagGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 107427 0.7 0.455669
Target:  5'- -uGACGGgGGUCGCCgcggcgaCCCCGCgCCcCg -3'
miRNA:   3'- cuUUGCCgUCAGCGGa------GGGGCG-GGcG- -5'
5499 5' -60.8 NC_001798.1 + 128300 0.7 0.455669
Target:  5'- -uGACGcGCcG-CGCCcCCCCGUCCGCc -3'
miRNA:   3'- cuUUGC-CGuCaGCGGaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 62824 0.7 0.455669
Target:  5'- -uGugGGCccaCGCgC-CCCCGCCCGCg -3'
miRNA:   3'- cuUugCCGucaGCG-GaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 28195 0.7 0.455669
Target:  5'- aGGGCGGgGGgaaggCGCCggaggCCCCGCacgCCGCg -3'
miRNA:   3'- cUUUGCCgUCa----GCGGa----GGGGCG---GGCG- -5'
5499 5' -60.8 NC_001798.1 + 52581 0.7 0.464602
Target:  5'- cGAcACGGUGGUCGCgugcguggCCCUGgCCGCg -3'
miRNA:   3'- -CUuUGCCGUCAGCGga------GGGGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 448 0.7 0.473626
Target:  5'- cGggGCuGCGGUcccgcggcCGCCUcCCCCGCggCCGCc -3'
miRNA:   3'- -CuuUGcCGUCA--------GCGGA-GGGGCG--GGCG- -5'
5499 5' -60.8 NC_001798.1 + 21630 0.7 0.473626
Target:  5'- cGAucCGGguG-CGUCggugCCCCGCUCGCc -3'
miRNA:   3'- -CUuuGCCguCaGCGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 5104 0.7 0.473626
Target:  5'- ---uUGGCAGUCuCuCUCCCC-CCCGUg -3'
miRNA:   3'- cuuuGCCGUCAGcG-GAGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 153832 0.7 0.482736
Target:  5'- -cGGCGuGCGGggccuccggCGCCUUCCC-CCCGCc -3'
miRNA:   3'- cuUUGC-CGUCa--------GCGGAGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 14794 0.7 0.491931
Target:  5'- ---uCGGguGcgcguaUCGCCUgcgCCCCGCCCGg -3'
miRNA:   3'- cuuuGCCguC------AGCGGA---GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 55133 0.7 0.491931
Target:  5'- cGGGACuaaGCcuGUCGCCcaUgCCCGCCCGCc -3'
miRNA:   3'- -CUUUGc--CGu-CAGCGG--AgGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 69076 0.7 0.491931
Target:  5'- --cGCGcGCAGcCGCuCUCggCCCGCCCGg -3'
miRNA:   3'- cuuUGC-CGUCaGCG-GAG--GGGCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.