miRNA display CGI


Results 81 - 100 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 14794 0.7 0.491931
Target:  5'- ---uCGGguGcgcguaUCGCCUgcgCCCCGCCCGg -3'
miRNA:   3'- cuuuGCCguC------AGCGGA---GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 70449 0.7 0.501205
Target:  5'- --cAUGGCGGUgGCgCUCCCCGagaccCCCGa -3'
miRNA:   3'- cuuUGCCGUCAgCG-GAGGGGC-----GGGCg -5'
5499 5' -60.8 NC_001798.1 + 139292 0.7 0.501205
Target:  5'- gGggGCGcauaGCGccgcGUCGCCgCCCCGCguCCGCa -3'
miRNA:   3'- -CuuUGC----CGU----CAGCGGaGGGGCG--GGCG- -5'
5499 5' -60.8 NC_001798.1 + 115584 0.7 0.501205
Target:  5'- -uGGCGGCAG-CGCCUCgCCCacgGCCgGg -3'
miRNA:   3'- cuUUGCCGUCaGCGGAG-GGG---CGGgCg -5'
5499 5' -60.8 NC_001798.1 + 88 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 154426 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 2805 0.69 0.510556
Target:  5'- --cGCGGCAG-CGCCgggCCCaggGCCCcgGCg -3'
miRNA:   3'- cuuUGCCGUCaGCGGa--GGGg--CGGG--CG- -5'
5499 5' -60.8 NC_001798.1 + 147185 0.69 0.519978
Target:  5'- ----gGGCGGaaggCGUC-CCCCGCCCGg -3'
miRNA:   3'- cuuugCCGUCa---GCGGaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 152627 0.69 0.519978
Target:  5'- cAGAUGGgAGUCcccCCggcgCCCCGCCgGCg -3'
miRNA:   3'- cUUUGCCgUCAGc--GGa---GGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 153081 0.69 0.519978
Target:  5'- cGGAGCGGCGGggcggCGCCgggCCCuCGCggauauauaCGCg -3'
miRNA:   3'- -CUUUGCCGUCa----GCGGa--GGG-GCGg--------GCG- -5'
5499 5' -60.8 NC_001798.1 + 37626 0.69 0.529468
Target:  5'- ---uUGGCGGUaaGCUUCCCCccuCCCGCg -3'
miRNA:   3'- cuuuGCCGUCAg-CGGAGGGGc--GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 136004 0.69 0.529468
Target:  5'- gGggGCGGggaguCGGUCgGCgUCCCCGuggaucuguaCCCGCg -3'
miRNA:   3'- -CuuUGCC-----GUCAG-CGgAGGGGC----------GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 121474 0.69 0.529468
Target:  5'- cGGGCgGGCuGuUCGUCUCCCUGCCgGUc -3'
miRNA:   3'- cUUUG-CCGuC-AGCGGAGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 31390 0.69 0.529468
Target:  5'- cGGAgGGCAGgaCGCC-CCCCGCgagacagccCCGCg -3'
miRNA:   3'- cUUUgCCGUCa-GCGGaGGGGCG---------GGCG- -5'
5499 5' -60.8 NC_001798.1 + 74979 0.69 0.529468
Target:  5'- cGAGA-GGCc--CGCCcccaaggCCCCGCCCGCc -3'
miRNA:   3'- -CUUUgCCGucaGCGGa------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24730 0.69 0.535193
Target:  5'- --cGCGGCcGcccCGCCgcacgccgacgcgCCCCGCCUGCg -3'
miRNA:   3'- cuuUGCCGuCa--GCGGa------------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 84510 0.69 0.536149
Target:  5'- ----gGGCGGcCGCCguagggcuuccccaUCCCCGCCauCGCg -3'
miRNA:   3'- cuuugCCGUCaGCGG--------------AGGGGCGG--GCG- -5'
5499 5' -60.8 NC_001798.1 + 31592 0.69 0.538063
Target:  5'- --cGCGGCcGUCGCC-CCgcgcguccggaguCCGCcCCGCg -3'
miRNA:   3'- cuuUGCCGuCAGCGGaGG-------------GGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 58656 0.69 0.539021
Target:  5'- -cGGCGGCGGUUGUC-CCgagGCCCGCc -3'
miRNA:   3'- cuUUGCCGUCAGCGGaGGgg-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 129577 0.69 0.539021
Target:  5'- -cGACGGCggggaGGUCGUCUCgcugaCCGCCCa- -3'
miRNA:   3'- cuUUGCCG-----UCAGCGGAGg----GGCGGGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.