miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 122480 0.69 0.546706
Target:  5'- cAGACGGCGcugcugcGUCGCUUUCCCGCgcucgagggacccCUGCg -3'
miRNA:   3'- cUUUGCCGU-------CAGCGGAGGGGCG-------------GGCG- -5'
5499 5' -60.8 NC_001798.1 + 28785 0.69 0.547669
Target:  5'- gGAGGCGGCGG-CGgcggcgcgcggguCCUCCgCCG-CCGCg -3'
miRNA:   3'- -CUUUGCCGUCaGC-------------GGAGG-GGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 102325 0.69 0.548632
Target:  5'- -cGGCGGCGcuUCGCCgacCCCCGgauCCCGUg -3'
miRNA:   3'- cuUUGCCGUc-AGCGGa--GGGGC---GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 34856 0.69 0.548632
Target:  5'- cGGGCGGgGGaCGCCU-UCCGCCCGg -3'
miRNA:   3'- cUUUGCCgUCaGCGGAgGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 306 0.69 0.548632
Target:  5'- aAGACGcCAGUCGCa-CCaCCGCUCGCc -3'
miRNA:   3'- cUUUGCcGUCAGCGgaGG-GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 84889 0.69 0.548632
Target:  5'- cAGACGGCcG-CGUC-CCCCGCgCCGUc -3'
miRNA:   3'- cUUUGCCGuCaGCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 43125 0.69 0.548632
Target:  5'- ---cCGGCGGgcgCGCgUCCCgCGUCaCGCg -3'
miRNA:   3'- cuuuGCCGUCa--GCGgAGGG-GCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 18463 0.69 0.552492
Target:  5'- aGAAGCGGCAguuuGUCGacacaccccccacuaCC-CCCCGCCCc- -3'
miRNA:   3'- -CUUUGCCGU----CAGC---------------GGaGGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 48384 0.69 0.552492
Target:  5'- ----gGGCGuGcCGCCgcgaccgcacgggcCCCCGCCCGCu -3'
miRNA:   3'- cuuugCCGU-CaGCGGa-------------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 138598 0.69 0.558296
Target:  5'- ----aGGCAcUCGCCgCgCUGCCCGCu -3'
miRNA:   3'- cuuugCCGUcAGCGGaGgGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 50952 0.69 0.558296
Target:  5'- gGAGGCGcGCcuccacccGGUC-CCaugCCCCGUCCGCg -3'
miRNA:   3'- -CUUUGC-CG--------UCAGcGGa--GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 4719 0.68 0.566062
Target:  5'- --cGCGGCAGgcucgucgacgGCCUCCCCGgaCGCc -3'
miRNA:   3'- cuuUGCCGUCag---------CGGAGGGGCggGCG- -5'
5499 5' -60.8 NC_001798.1 + 54665 0.68 0.568007
Target:  5'- ---cCGGCAGcCGCggcgCgCCCGCUCGCg -3'
miRNA:   3'- cuuuGCCGUCaGCGga--G-GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 92499 0.68 0.568007
Target:  5'- --cACGGCGGcCGCCaCCUgGCCCccaGCa -3'
miRNA:   3'- cuuUGCCGUCaGCGGaGGGgCGGG---CG- -5'
5499 5' -60.8 NC_001798.1 + 82195 0.68 0.576784
Target:  5'- -cGGCGGCAGUgcCGCCUucuccgggccuugCCCC-CCCGa -3'
miRNA:   3'- cuUUGCCGUCA--GCGGA-------------GGGGcGGGCg -5'
5499 5' -60.8 NC_001798.1 + 28960 0.68 0.577761
Target:  5'- ---cCGGCGccgcccCGCCgCUCCGCCCGCc -3'
miRNA:   3'- cuuuGCCGUca----GCGGaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 25233 0.68 0.577761
Target:  5'- ---cCGGCc--CGCCgagggCCCCGaCCCGCa -3'
miRNA:   3'- cuuuGCCGucaGCGGa----GGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 145391 0.68 0.577761
Target:  5'- aGggGCGacGCGGggaaagCGCgC-CCCCGCCCGg -3'
miRNA:   3'- -CuuUGC--CGUCa-----GCG-GaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 118883 0.68 0.577761
Target:  5'- -cAACGGgGaucccGUCaGCCUCguCCCGCCCGUc -3'
miRNA:   3'- cuUUGCCgU-----CAG-CGGAG--GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 150966 0.68 0.58657
Target:  5'- aGAGACGGgagccccCGGUuagUGCCcgacCCCCGCCCGa -3'
miRNA:   3'- -CUUUGCC-------GUCA---GCGGa---GGGGCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.