miRNA display CGI


Results 81 - 100 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 89479 0.67 0.626945
Target:  5'- ---cCGGCAGgaugaaGcCCUUCUgGCCCGCa -3'
miRNA:   3'- cuuuGCCGUCag----C-GGAGGGgCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 25014 0.67 0.626945
Target:  5'- --cGCGGCcgacUCGCUcgCCgCGCCCGCc -3'
miRNA:   3'- cuuUGCCGuc--AGCGGa-GGgGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 113778 0.68 0.617074
Target:  5'- -cAGgGGCAGcUCGCC-CCCgUGCCUGUu -3'
miRNA:   3'- cuUUgCCGUC-AGCGGaGGG-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 149790 0.68 0.617074
Target:  5'- gGAcGCGGaCGcGaCGCUcccaccagCCCCGCCCGCa -3'
miRNA:   3'- -CUuUGCC-GU-CaGCGGa-------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 5457 0.68 0.607213
Target:  5'- cGGGCGGCuucCGCU--UCCGCCCGCg -3'
miRNA:   3'- cUUUGCCGucaGCGGagGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 62553 0.68 0.607213
Target:  5'- --cGCGGCuauGUCGCCggacgUCgCCGCCaCGUc -3'
miRNA:   3'- cuuUGCCGu--CAGCGG-----AGgGGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 147078 0.68 0.607213
Target:  5'- ---uCGGCGGcCGCC-CCCUccgGCgCCGCg -3'
miRNA:   3'- cuuuGCCGUCaGCGGaGGGG---CG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 134355 0.68 0.601304
Target:  5'- cGAAAgGGC-GUCGUggggcccgccggccgCUCCUCGCgCCGCc -3'
miRNA:   3'- -CUUUgCCGuCAGCG---------------GAGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 4013 0.68 0.59737
Target:  5'- uGAAGCGGCccguggcGUCGCggccggCCaCCGCCgCGCg -3'
miRNA:   3'- -CUUUGCCGu------CAGCGga----GG-GGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 52380 0.68 0.59737
Target:  5'- --cGCGGCGcGcCGCCUgCUCGCCaccaGCg -3'
miRNA:   3'- cuuUGCCGU-CaGCGGAgGGGCGGg---CG- -5'
5499 5' -60.8 NC_001798.1 + 106087 0.68 0.59737
Target:  5'- ---cUGGCGGUCGCggcgaCCCgGCgCCGCg -3'
miRNA:   3'- cuuuGCCGUCAGCGga---GGGgCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 114815 0.68 0.59737
Target:  5'- --cACGGCGacgcagccguccGUgGCCgugCCCCGCCUGa -3'
miRNA:   3'- cuuUGCCGU------------CAgCGGa--GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 150377 0.68 0.59737
Target:  5'- cGGGCGGCgcgggcccGGcCGCgUCCgCGCUCGCa -3'
miRNA:   3'- cUUUGCCG--------UCaGCGgAGGgGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 83693 0.68 0.596386
Target:  5'- cGGGACGGUGGcUCGCC-CCCUuucauagGCgCGCg -3'
miRNA:   3'- -CUUUGCCGUC-AGCGGaGGGG-------CGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 3508 0.68 0.595404
Target:  5'- --cACGGCGGcCGCCacgugcgccaggCCCCagccgaagcgGCCCGCc -3'
miRNA:   3'- cuuUGCCGUCaGCGGa-----------GGGG----------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 78641 0.68 0.58755
Target:  5'- ----aGGUGGUCGCCgUCCCgGCgaCCGUg -3'
miRNA:   3'- cuuugCCGUCAGCGG-AGGGgCG--GGCG- -5'
5499 5' -60.8 NC_001798.1 + 81797 0.68 0.58755
Target:  5'- aGGggUGGC-GUcCGCCggcacUCCCCGCCC-Cg -3'
miRNA:   3'- -CUuuGCCGuCA-GCGG-----AGGGGCGGGcG- -5'
5499 5' -60.8 NC_001798.1 + 150966 0.68 0.58657
Target:  5'- aGAGACGGgagccccCGGUuagUGCCcgacCCCCGCCCGa -3'
miRNA:   3'- -CUUUGCC-------GUCA---GCGGa---GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 25233 0.68 0.577761
Target:  5'- ---cCGGCc--CGCCgagggCCCCGaCCCGCa -3'
miRNA:   3'- cuuuGCCGucaGCGGa----GGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 145391 0.68 0.577761
Target:  5'- aGggGCGacGCGGggaaagCGCgC-CCCCGCCCGg -3'
miRNA:   3'- -CuuUGC--CGUCa-----GCG-GaGGGGCGGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.