miRNA display CGI


Results 121 - 140 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 84510 0.69 0.536149
Target:  5'- ----gGGCGGcCGCCguagggcuuccccaUCCCCGCCauCGCg -3'
miRNA:   3'- cuuugCCGUCaGCGG--------------AGGGGCGG--GCG- -5'
5499 5' -60.8 NC_001798.1 + 24730 0.69 0.535193
Target:  5'- --cGCGGCcGcccCGCCgcacgccgacgcgCCCCGCCUGCg -3'
miRNA:   3'- cuuUGCCGuCa--GCGGa------------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 37626 0.69 0.529468
Target:  5'- ---uUGGCGGUaaGCUUCCCCccuCCCGCg -3'
miRNA:   3'- cuuuGCCGUCAg-CGGAGGGGc--GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 74979 0.69 0.529468
Target:  5'- cGAGA-GGCc--CGCCcccaaggCCCCGCCCGCc -3'
miRNA:   3'- -CUUUgCCGucaGCGGa------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 121474 0.69 0.529468
Target:  5'- cGGGCgGGCuGuUCGUCUCCCUGCCgGUc -3'
miRNA:   3'- cUUUG-CCGuC-AGCGGAGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 31390 0.69 0.529468
Target:  5'- cGGAgGGCAGgaCGCC-CCCCGCgagacagccCCGCg -3'
miRNA:   3'- cUUUgCCGUCa-GCGGaGGGGCG---------GGCG- -5'
5499 5' -60.8 NC_001798.1 + 136004 0.69 0.529468
Target:  5'- gGggGCGGggaguCGGUCgGCgUCCCCGuggaucuguaCCCGCg -3'
miRNA:   3'- -CuuUGCC-----GUCAG-CGgAGGGGC----------GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 153081 0.69 0.519978
Target:  5'- cGGAGCGGCGGggcggCGCCgggCCCuCGCggauauauaCGCg -3'
miRNA:   3'- -CUUUGCCGUCa----GCGGa--GGG-GCGg--------GCG- -5'
5499 5' -60.8 NC_001798.1 + 152627 0.69 0.519978
Target:  5'- cAGAUGGgAGUCcccCCggcgCCCCGCCgGCg -3'
miRNA:   3'- cUUUGCCgUCAGc--GGa---GGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 147185 0.69 0.519978
Target:  5'- ----gGGCGGaaggCGUC-CCCCGCCCGg -3'
miRNA:   3'- cuuugCCGUCa---GCGGaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 2805 0.69 0.510556
Target:  5'- --cGCGGCAG-CGCCgggCCCaggGCCCcgGCg -3'
miRNA:   3'- cuuUGCCGUCaGCGGa--GGGg--CGGG--CG- -5'
5499 5' -60.8 NC_001798.1 + 154426 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 88 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 115584 0.7 0.501205
Target:  5'- -uGGCGGCAG-CGCCUCgCCCacgGCCgGg -3'
miRNA:   3'- cuUUGCCGUCaGCGGAG-GGG---CGGgCg -5'
5499 5' -60.8 NC_001798.1 + 139292 0.7 0.501205
Target:  5'- gGggGCGcauaGCGccgcGUCGCCgCCCCGCguCCGCa -3'
miRNA:   3'- -CuuUGC----CGU----CAGCGGaGGGGCG--GGCG- -5'
5499 5' -60.8 NC_001798.1 + 70449 0.7 0.501205
Target:  5'- --cAUGGCGGUgGCgCUCCCCGagaccCCCGa -3'
miRNA:   3'- cuuUGCCGUCAgCG-GAGGGGC-----GGGCg -5'
5499 5' -60.8 NC_001798.1 + 107128 0.7 0.491931
Target:  5'- ---cCGGCAcccuaUCGCCUCCCUGCugugcuacccggCCGCg -3'
miRNA:   3'- cuuuGCCGUc----AGCGGAGGGGCG------------GGCG- -5'
5499 5' -60.8 NC_001798.1 + 69076 0.7 0.491931
Target:  5'- --cGCGcGCAGcCGCuCUCggCCCGCCCGg -3'
miRNA:   3'- cuuUGC-CGUCaGCG-GAG--GGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 55133 0.7 0.491931
Target:  5'- cGGGACuaaGCcuGUCGCCcaUgCCCGCCCGCc -3'
miRNA:   3'- -CUUUGc--CGu-CAGCGG--AgGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 14794 0.7 0.491931
Target:  5'- ---uCGGguGcgcguaUCGCCUgcgCCCCGCCCGg -3'
miRNA:   3'- cuuuGCCguC------AGCGGA---GGGGCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.