miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 31390 0.69 0.529468
Target:  5'- cGGAgGGCAGgaCGCC-CCCCGCgagacagccCCGCg -3'
miRNA:   3'- cUUUgCCGUCa-GCGGaGGGGCG---------GGCG- -5'
5499 5' -60.8 NC_001798.1 + 31592 0.69 0.538063
Target:  5'- --cGCGGCcGUCGCC-CCgcgcguccggaguCCGCcCCGCg -3'
miRNA:   3'- cuuUGCCGuCAGCGGaGG-------------GGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 31661 0.67 0.676212
Target:  5'- gGAcGCGGCcGg-GCCcgCgCCGCCCGCc -3'
miRNA:   3'- -CUuUGCCGuCagCGGa-GgGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 31922 0.66 0.723678
Target:  5'- --cGCGGCcucguccUCGCCUCUuccuccgCCGCcCCGCg -3'
miRNA:   3'- cuuUGCCGuc-----AGCGGAGG-------GGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 33631 0.67 0.656552
Target:  5'- --cGCccCGG-CGCCcaCCCCGCCCGCa -3'
miRNA:   3'- cuuUGccGUCaGCGGa-GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 34110 0.66 0.724631
Target:  5'- gGggGCGGUGGgCGUacgggCCCGaCCCGCg -3'
miRNA:   3'- -CuuUGCCGUCaGCGgag--GGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 34856 0.69 0.548632
Target:  5'- cGGGCGGgGGaCGCCU-UCCGCCCGg -3'
miRNA:   3'- cUUUGCCgUCaGCGGAgGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 35545 0.67 0.626945
Target:  5'- --cGCGGgGcGUUGCCggCCCgGCCCGg -3'
miRNA:   3'- cuuUGCCgU-CAGCGGa-GGGgCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 36640 0.67 0.626945
Target:  5'- cGGGCGGgGGcgCGCuUUCCCCGCgUCGCc -3'
miRNA:   3'- cUUUGCCgUCa-GCG-GAGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 37626 0.69 0.529468
Target:  5'- ---uUGGCGGUaaGCUUCCCCccuCCCGCg -3'
miRNA:   3'- cuuuGCCGUCAg-CGGAGGGGc--GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 39549 0.66 0.685995
Target:  5'- -cGugGGUGG-CGCCggggCCguCCGUCCGCg -3'
miRNA:   3'- cuUugCCGUCaGCGGa---GG--GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 39682 0.76 0.211554
Target:  5'- ---cCGGCGG-CGaCCUCgCCGCCCGCc -3'
miRNA:   3'- cuuuGCCGUCaGC-GGAGgGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 39826 0.76 0.206574
Target:  5'- -uGGCGGaucGUCGgCUCCCCGCCgCGCu -3'
miRNA:   3'- cuUUGCCgu-CAGCgGAGGGGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 40019 0.73 0.312811
Target:  5'- --cGCGGCGG-C-CCUCCUCGuCCCGCu -3'
miRNA:   3'- cuuUGCCGUCaGcGGAGGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 43125 0.69 0.548632
Target:  5'- ---cCGGCGGgcgCGCgUCCCgCGUCaCGCg -3'
miRNA:   3'- cuuuGCCGUCa--GCGgAGGG-GCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 43336 0.77 0.174492
Target:  5'- gGggGCGGCAGUgcCGCC-CCCCGCgUCGUc -3'
miRNA:   3'- -CuuUGCCGUCA--GCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 43523 0.74 0.292572
Target:  5'- uAGGCGGCGGcCGCgUCuCCCGCCaggGCg -3'
miRNA:   3'- cUUUGCCGUCaGCGgAG-GGGCGGg--CG- -5'
5499 5' -60.8 NC_001798.1 + 45929 0.66 0.705428
Target:  5'- gGGggUGGCGGUCGCgUccggaaCCCCucugggguagGCCCGg -3'
miRNA:   3'- -CUuuGCCGUCAGCGgA------GGGG----------CGGGCg -5'
5499 5' -60.8 NC_001798.1 + 46428 0.71 0.420898
Target:  5'- ---cCGGCGGUCGCgagcgCCCCGUCCa- -3'
miRNA:   3'- cuuuGCCGUCAGCGga---GGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 47920 0.66 0.713141
Target:  5'- -uGACGcGCGGggCGCCUaaggccuccgcgaCCCCggcgaccgaccccGCCCGCg -3'
miRNA:   3'- cuUUGC-CGUCa-GCGGA-------------GGGG-------------CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.