miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 48384 0.69 0.552492
Target:  5'- ----gGGCGuGcCGCCgcgaccgcacgggcCCCCGCCCGCu -3'
miRNA:   3'- cuuugCCGU-CaGCGGa-------------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 49316 0.66 0.685995
Target:  5'- --cACGGCGacGUgGCgUUCCCCacccuGCCCGCc -3'
miRNA:   3'- cuuUGCCGU--CAgCG-GAGGGG-----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 49854 0.71 0.445073
Target:  5'- -cGGCGGCGGaggaacccggggCGCCccucacgaCCCCGCCCGUc -3'
miRNA:   3'- cuUUGCCGUCa-----------GCGGa-------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 50952 0.69 0.558296
Target:  5'- gGAGGCGcGCcuccacccGGUC-CCaugCCCCGUCCGCg -3'
miRNA:   3'- -CUUUGC-CG--------UCAGcGGa--GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 51103 0.66 0.715063
Target:  5'- gGAGAUGGCgAGcgaagaGCCgcCCCCGCgCCGUc -3'
miRNA:   3'- -CUUUGCCG-UCag----CGGa-GGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 51185 0.77 0.192241
Target:  5'- cGGGCGGCGG-CGCCcCCCCGCCgGg -3'
miRNA:   3'- cUUUGCCGUCaGCGGaGGGGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 51632 0.66 0.695736
Target:  5'- ---gUGGgGGUCaugcacuuuGCCUCCCCGgCCGa -3'
miRNA:   3'- cuuuGCCgUCAG---------CGGAGGGGCgGGCg -5'
5499 5' -60.8 NC_001798.1 + 52058 0.66 0.715063
Target:  5'- uGggGCGcGaCuGUCGCgUggCCGCCCGCu -3'
miRNA:   3'- -CuuUGC-C-GuCAGCGgAggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 52380 0.68 0.59737
Target:  5'- --cGCGGCGcGcCGCCUgCUCGCCaccaGCg -3'
miRNA:   3'- cuuUGCCGU-CaGCGGAgGGGCGGg---CG- -5'
5499 5' -60.8 NC_001798.1 + 52581 0.7 0.464602
Target:  5'- cGAcACGGUGGUCGCgugcguggCCCUGgCCGCg -3'
miRNA:   3'- -CUuUGCCGUCAGCGga------GGGGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 52800 0.78 0.154368
Target:  5'- cGGGACGGCAGacccCGCCUUCCUGCUCGa -3'
miRNA:   3'- -CUUUGCCGUCa---GCGGAGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 53814 0.72 0.395079
Target:  5'- uGGACGGCGgacaaguacguguGUCGCCgccugggCCCCGCCgauCGCc -3'
miRNA:   3'- cUUUGCCGU-------------CAGCGGa------GGGGCGG---GCG- -5'
5499 5' -60.8 NC_001798.1 + 54665 0.68 0.568007
Target:  5'- ---cCGGCAGcCGCggcgCgCCCGCUCGCg -3'
miRNA:   3'- cuuuGCCGUCaGCGga--G-GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 55133 0.7 0.491931
Target:  5'- cGGGACuaaGCcuGUCGCCcaUgCCCGCCCGCc -3'
miRNA:   3'- -CUUUGc--CGu-CAGCGG--AgGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 55777 0.66 0.695736
Target:  5'- --cGCuGCAGcCGCCga-CCGCCUGCu -3'
miRNA:   3'- cuuUGcCGUCaGCGGaggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 58656 0.69 0.539021
Target:  5'- -cGGCGGCGGUUGUC-CCgagGCCCGCc -3'
miRNA:   3'- cuUUGCCGUCAGCGGaGGgg-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 59203 0.76 0.206574
Target:  5'- ----aGGCAGuguUCGCCgCuCCCGCCCGCg -3'
miRNA:   3'- cuuugCCGUC---AGCGGaG-GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 59831 0.67 0.666395
Target:  5'- uGggGCGccGCGGUCGCCcgcgUCCgGCUCGg -3'
miRNA:   3'- -CuuUGC--CGUCAGCGGa---GGGgCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 62468 0.72 0.367188
Target:  5'- -cGACGGCgcccGGUCGuCCUccucggagauacucaCCCCGCCCGa -3'
miRNA:   3'- cuUUGCCG----UCAGC-GGA---------------GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 62553 0.68 0.607213
Target:  5'- --cGCGGCuauGUCGCCggacgUCgCCGCCaCGUc -3'
miRNA:   3'- cuuUGCCGu--CAGCGG-----AGgGGCGG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.