miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 62824 0.7 0.455669
Target:  5'- -uGugGGCccaCGCgC-CCCCGCCCGCg -3'
miRNA:   3'- cuUugCCGucaGCG-GaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 67323 0.82 0.093366
Target:  5'- -cGACGGCGGUUcgGCCaUCCCCGCCgGCu -3'
miRNA:   3'- cuUUGCCGUCAG--CGG-AGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 68219 0.73 0.312811
Target:  5'- --cACGcGCAGgccCGCCaCCCCGCCgCGCg -3'
miRNA:   3'- cuuUGC-CGUCa--GCGGaGGGGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 68934 0.66 0.715063
Target:  5'- gGAAAac-CGGUCcaGCCgcgCCCCgGCCCGCg -3'
miRNA:   3'- -CUUUgccGUCAG--CGGa--GGGG-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 69076 0.7 0.491931
Target:  5'- --cGCGcGCAGcCGCuCUCggCCCGCCCGg -3'
miRNA:   3'- cuuUGC-CGUCaGCG-GAG--GGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 69309 0.66 0.705428
Target:  5'- gGGGACGGuCAG-C-CCUCCCgCGCgCCGg -3'
miRNA:   3'- -CUUUGCC-GUCaGcGGAGGG-GCG-GGCg -5'
5499 5' -60.8 NC_001798.1 + 70030 0.72 0.356418
Target:  5'- -cGGCGGCAGUCauucccguuuggGCCcgcggUCUCCGCgCCGCg -3'
miRNA:   3'- cuUUGCCGUCAG------------CGG-----AGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 70123 0.67 0.666395
Target:  5'- ---cCGGCGccCGCCggcaugacccCCCCGUCCGCu -3'
miRNA:   3'- cuuuGCCGUcaGCGGa---------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 70449 0.7 0.501205
Target:  5'- --cAUGGCGGUgGCgCUCCCCGagaccCCCGa -3'
miRNA:   3'- cuuUGCCGUCAgCG-GAGGGGC-----GGGCg -5'
5499 5' -60.8 NC_001798.1 + 72246 0.67 0.656552
Target:  5'- --uGCGGCccgcGGUCcagcuGCCUCCCC-CCCaGCc -3'
miRNA:   3'- cuuUGCCG----UCAG-----CGGAGGGGcGGG-CG- -5'
5499 5' -60.8 NC_001798.1 + 72814 0.72 0.395896
Target:  5'- ---cUGGCGG-CGCCUCUCgGCCgGCu -3'
miRNA:   3'- cuuuGCCGUCaGCGGAGGGgCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 74724 0.72 0.371872
Target:  5'- -uGugGGCAG-CaGCCcuggaggggaCCCCGCCCGCg -3'
miRNA:   3'- cuUugCCGUCaG-CGGa---------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 74779 0.67 0.626945
Target:  5'- --cGCGGCcucgGGUccaccgcaCGCCgCCCCGCCCccGCa -3'
miRNA:   3'- cuuUGCCG----UCA--------GCGGaGGGGCGGG--CG- -5'
5499 5' -60.8 NC_001798.1 + 74979 0.69 0.529468
Target:  5'- cGAGA-GGCc--CGCCcccaaggCCCCGCCCGCc -3'
miRNA:   3'- -CUUUgCCGucaGCGGa------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 75282 0.66 0.695736
Target:  5'- --cGCGGCGcgcGaUGCCgCCCUGgCCCGCg -3'
miRNA:   3'- cuuUGCCGU---CaGCGGaGGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 75707 0.67 0.676212
Target:  5'- uGGAuCuGCAGcugcgCGCCgCCCCGCCgGCc -3'
miRNA:   3'- -CUUuGcCGUCa----GCGGaGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 75905 0.67 0.635833
Target:  5'- cGAGAUGcGC-GagGCCUuagacgcCCUCGCCCGCg -3'
miRNA:   3'- -CUUUGC-CGuCagCGGA-------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 76007 0.75 0.243634
Target:  5'- -cGGCGGCAGg-GCCccgUgCCCGCCCGCc -3'
miRNA:   3'- cuUUGCCGUCagCGG---AgGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 76875 0.73 0.334094
Target:  5'- -uGGCGacccuGCGG--GCCUCCCUGCCCGCg -3'
miRNA:   3'- cuUUGC-----CGUCagCGGAGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 77250 0.66 0.715063
Target:  5'- cGGACGcGguGUCgGCC-CUgggcgcggCCGCCCGCg -3'
miRNA:   3'- cUUUGC-CguCAG-CGGaGG--------GGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.