miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 105743 0.74 0.279023
Target:  5'- cGggUGGguGUCGCCggcgacaaaugagUCCCCgcgcGCCCGCg -3'
miRNA:   3'- cUuuGCCguCAGCGG-------------AGGGG----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 105264 0.73 0.326883
Target:  5'- --cGCGGCAucCGCCUCUUCGgCCGCg -3'
miRNA:   3'- cuuUGCCGUcaGCGGAGGGGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 105204 0.73 0.312811
Target:  5'- --cGCGGUGGgcgacggCGCUgCCCCGUCCGCa -3'
miRNA:   3'- cuuUGCCGUCa------GCGGaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 104146 0.71 0.420898
Target:  5'- -cGACGcCAGUgGCCgCCCCGCCUGg -3'
miRNA:   3'- cuUUGCcGUCAgCGGaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 103571 0.75 0.26114
Target:  5'- ----gGGCAGaggCGCCUCCaaCCGCUCGCg -3'
miRNA:   3'- cuuugCCGUCa--GCGGAGG--GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 102361 0.67 0.63682
Target:  5'- ---cCGGCGGcCGCCggaagcccaCCCGCCUGg -3'
miRNA:   3'- cuuuGCCGUCaGCGGag-------GGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 102325 0.69 0.548632
Target:  5'- -cGGCGGCGcuUCGCCgacCCCCGgauCCCGUg -3'
miRNA:   3'- cuUUGCCGUc-AGCGGa--GGGGC---GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 100380 0.67 0.666395
Target:  5'- -cAACGaGCuG-CGCCUCaCCCGCgaCGCg -3'
miRNA:   3'- cuUUGC-CGuCaGCGGAG-GGGCGg-GCG- -5'
5499 5' -60.8 NC_001798.1 + 98656 0.73 0.348861
Target:  5'- cGAACGGgGGUccCGCCUCCCgG-CCGCc -3'
miRNA:   3'- cUUUGCCgUCA--GCGGAGGGgCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 98496 0.71 0.438086
Target:  5'- cGGGCGGCGGgagcgacgCGCC-CCCguagGCCCGCc -3'
miRNA:   3'- cUUUGCCGUCa-------GCGGaGGGg---CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 96988 0.72 0.356418
Target:  5'- cGGGCGGCGGggccaggGCCggcCCgCCGCCCGCc -3'
miRNA:   3'- cUUUGCCGUCag-----CGGa--GG-GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 96168 0.71 0.429441
Target:  5'- --cAUGGCGGcCGCgC-CCCCGgCCGCg -3'
miRNA:   3'- cuuUGCCGUCaGCG-GaGGGGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 95384 0.67 0.63682
Target:  5'- cGggGCGGCGGUCGCCagCagcgUGUuuGUg -3'
miRNA:   3'- -CuuUGCCGUCAGCGGagGg---GCGggCG- -5'
5499 5' -60.8 NC_001798.1 + 94986 0.74 0.292572
Target:  5'- cAGGCGGCGGcCGCCUgggCCCCGCagggcggCGCg -3'
miRNA:   3'- cUUUGCCGUCaGCGGA---GGGGCGg------GCG- -5'
5499 5' -60.8 NC_001798.1 + 92931 0.66 0.695736
Target:  5'- ----aGGCGGUCGUCgggCCCG-CCGCc -3'
miRNA:   3'- cuuugCCGUCAGCGGag-GGGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 92499 0.68 0.568007
Target:  5'- --cACGGCGGcCGCCaCCUgGCCCccaGCa -3'
miRNA:   3'- cuuUGCCGUCaGCGGaGGGgCGGG---CG- -5'
5499 5' -60.8 NC_001798.1 + 92106 0.66 0.689897
Target:  5'- -cGACGGCGGgcagcagCcgucgaccacgcgcgGCCUCCCCcGUCUGCc -3'
miRNA:   3'- cuUUGCCGUCa------G---------------CGGAGGGG-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 91774 0.66 0.715063
Target:  5'- aGAAgGGCGGccaCGCC-CCCUGCCgaugaCGCg -3'
miRNA:   3'- cUUUgCCGUCa--GCGGaGGGGCGG-----GCG- -5'
5499 5' -60.8 NC_001798.1 + 91478 0.67 0.640769
Target:  5'- uGGGAUGGCGGU-GCCgauguuccCCCCGgcucuuaccggcggaCCCGCg -3'
miRNA:   3'- -CUUUGCCGUCAgCGGa-------GGGGC---------------GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 91091 0.67 0.646691
Target:  5'- gGAGGCGGCcGUCGUggaCCCCGgugcgcugcUCCGCg -3'
miRNA:   3'- -CUUUGCCGuCAGCGga-GGGGC---------GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.