miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 90244 0.66 0.705428
Target:  5'- cGGAAaGGcCAGcUCGuCCUCCCC-CCCGg -3'
miRNA:   3'- -CUUUgCC-GUC-AGC-GGAGGGGcGGGCg -5'
5499 5' -60.8 NC_001798.1 + 89479 0.67 0.626945
Target:  5'- ---cCGGCAGgaugaaGcCCUUCUgGCCCGCa -3'
miRNA:   3'- cuuuGCCGUCag----C-GGAGGGgCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 87721 0.66 0.715063
Target:  5'- --cGCcGUAG-CGCCggcCCCCGCCgGCc -3'
miRNA:   3'- cuuUGcCGUCaGCGGa--GGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 86991 0.67 0.656552
Target:  5'- --cGCGGCuucuUCGCCgCCCuCGCCCa- -3'
miRNA:   3'- cuuUGCCGuc--AGCGGaGGG-GCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 86871 0.72 0.364088
Target:  5'- -cGGCGGCGGUCGCgcuuUUCCgCCGCCgGg -3'
miRNA:   3'- cuUUGCCGUCAGCG----GAGG-GGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 85935 0.66 0.685995
Target:  5'- gGggGCGGagaCAGcUGCUgcacgcgcgCCgCCGCCCGCa -3'
miRNA:   3'- -CuuUGCC---GUCaGCGGa--------GG-GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 85286 0.72 0.379769
Target:  5'- cGggGgGGCGGggGCCggggUCCGCCCGCg -3'
miRNA:   3'- -CuuUgCCGUCagCGGag--GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 84889 0.69 0.548632
Target:  5'- cAGACGGCcG-CGUC-CCCCGCgCCGUc -3'
miRNA:   3'- cUUUGCCGuCaGCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 84510 0.69 0.536149
Target:  5'- ----gGGCGGcCGCCguagggcuuccccaUCCCCGCCauCGCg -3'
miRNA:   3'- cuuugCCGUCaGCGG--------------AGGGGCGG--GCG- -5'
5499 5' -60.8 NC_001798.1 + 83693 0.68 0.596386
Target:  5'- cGGGACGGUGGcUCGCC-CCCUuucauagGCgCGCg -3'
miRNA:   3'- -CUUUGCCGUC-AGCGGaGGGG-------CGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 82195 0.68 0.576784
Target:  5'- -cGGCGGCAGUgcCGCCUucuccgggccuugCCCC-CCCGa -3'
miRNA:   3'- cuUUGCCGUCA--GCGGA-------------GGGGcGGGCg -5'
5499 5' -60.8 NC_001798.1 + 81797 0.68 0.58755
Target:  5'- aGGggUGGC-GUcCGCCggcacUCCCCGCCC-Cg -3'
miRNA:   3'- -CUuuGCCGuCA-GCGG-----AGGGGCGGGcG- -5'
5499 5' -60.8 NC_001798.1 + 81286 0.66 0.685018
Target:  5'- gGGGAUGGCGGaUCGggucccgaggaccCCgcugCCCCcCCCGCa -3'
miRNA:   3'- -CUUUGCCGUC-AGC-------------GGa---GGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 81233 0.67 0.626945
Target:  5'- ----aGGCAgGUC-CCUCUgccccgaccgCCGCCCGCg -3'
miRNA:   3'- cuuugCCGU-CAGcGGAGG----------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 80896 0.66 0.685995
Target:  5'- ---cUGGCGG-CGCagCUCCCgCGCCUGUc -3'
miRNA:   3'- cuuuGCCGUCaGCG--GAGGG-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 79963 0.74 0.299202
Target:  5'- cGGAGCGGCGG-CGCCgcgUCCgCCGCCgGg -3'
miRNA:   3'- -CUUUGCCGUCaGCGG---AGG-GGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 78641 0.68 0.58755
Target:  5'- ----aGGUGGUCGCCgUCCCgGCgaCCGUg -3'
miRNA:   3'- cuuugCCGUCAGCGG-AGGGgCG--GGCG- -5'
5499 5' -60.8 NC_001798.1 + 77250 0.66 0.715063
Target:  5'- cGGACGcGguGUCgGCC-CUgggcgcggCCGCCCGCg -3'
miRNA:   3'- cUUUGC-CguCAG-CGGaGG--------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 76875 0.73 0.334094
Target:  5'- -uGGCGacccuGCGG--GCCUCCCUGCCCGCg -3'
miRNA:   3'- cuUUGC-----CGUCagCGGAGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 76007 0.75 0.243634
Target:  5'- -cGGCGGCAGg-GCCccgUgCCCGCCCGCc -3'
miRNA:   3'- cuUUGCCGUCagCGG---AgGGGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.