Results 41 - 60 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5499 | 5' | -60.8 | NC_001798.1 | + | 150169 | 0.66 | 0.724631 |
Target: 5'- -cGGgGGCGGgcCGCCgCCCCcUCCGCg -3' miRNA: 3'- cuUUgCCGUCa-GCGGaGGGGcGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 4158 | 0.66 | 0.734126 |
Target: 5'- ----gGGCAccccCGCCUCCUCGUcguCCGCg -3' miRNA: 3'- cuuugCCGUca--GCGGAGGGGCG---GGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 122560 | 0.66 | 0.734126 |
Target: 5'- --cGCGGCcgaGGUgGCCUUCgUCGCgCGCa -3' miRNA: 3'- cuuUGCCG---UCAgCGGAGG-GGCGgGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 25434 | 0.66 | 0.734126 |
Target: 5'- --cGCGcGCuG-CGCCgCCCCGCCCc- -3' miRNA: 3'- cuuUGC-CGuCaGCGGaGGGGCGGGcg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 29933 | 0.66 | 0.734126 |
Target: 5'- gGggGCGGgacgcuugaCGGg-GCCgacCCCCGgCCCGCu -3' miRNA: 3'- -CuuUGCC---------GUCagCGGa--GGGGC-GGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 126472 | 0.66 | 0.715063 |
Target: 5'- cGAGACGGCcaugaccUCGCCcccgucgCCCCcCUCGCa -3' miRNA: 3'- -CUUUGCCGuc-----AGCGGa------GGGGcGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 91774 | 0.66 | 0.715063 |
Target: 5'- aGAAgGGCGGccaCGCC-CCCUGCCgaugaCGCg -3' miRNA: 3'- cUUUgCCGUCa--GCGGaGGGGCGG-----GCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 90244 | 0.66 | 0.705428 |
Target: 5'- cGGAAaGGcCAGcUCGuCCUCCCC-CCCGg -3' miRNA: 3'- -CUUUgCC-GUC-AGC-GGAGGGGcGGGCg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 47920 | 0.66 | 0.713141 |
Target: 5'- -uGACGcGCGGggCGCCUaaggccuccgcgaCCCCggcgaccgaccccGCCCGCg -3' miRNA: 3'- cuUUGC-CGUCa-GCGGA-------------GGGG-------------CGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 109290 | 0.66 | 0.714102 |
Target: 5'- --cGCGGCccacGcccacgacgcgauUCGCCUCUCCGaCCUGCu -3' miRNA: 3'- cuuUGCCGu---C-------------AGCGGAGGGGC-GGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 87721 | 0.66 | 0.715063 |
Target: 5'- --cGCcGUAG-CGCCggcCCCCGCCgGCc -3' miRNA: 3'- cuuUGcCGUCaGCGGa--GGGGCGGgCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 24495 | 0.66 | 0.715063 |
Target: 5'- uGAGCGccGCGccCGCCUCCgCGCCgGCc -3' miRNA: 3'- cUUUGC--CGUcaGCGGAGGgGCGGgCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 30194 | 0.66 | 0.715063 |
Target: 5'- --cGCGGgGGUccCGCCUCa-CGCcCCGCg -3' miRNA: 3'- cuuUGCCgUCA--GCGGAGggGCG-GGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 51103 | 0.66 | 0.715063 |
Target: 5'- gGAGAUGGCgAGcgaagaGCCgcCCCCGCgCCGUc -3' miRNA: 3'- -CUUUGCCG-UCag----CGGa-GGGGCG-GGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 68934 | 0.66 | 0.715063 |
Target: 5'- gGAAAac-CGGUCcaGCCgcgCCCCgGCCCGCg -3' miRNA: 3'- -CUUUgccGUCAG--CGGa--GGGG-CGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 110171 | 0.66 | 0.715063 |
Target: 5'- ----gGGC-GUUGaCgUCCgCCGCCCGCu -3' miRNA: 3'- cuuugCCGuCAGC-GgAGG-GGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 3049 | 0.66 | 0.715063 |
Target: 5'- --cACGGCcgccaGGUCGCCgucgaagccCUCCGCCaGCg -3' miRNA: 3'- cuuUGCCG-----UCAGCGGa--------GGGGCGGgCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 23279 | 0.66 | 0.715063 |
Target: 5'- --cAUGGCcagccuGUCGCCgcgacCCCCGgcgcCCCGCc -3' miRNA: 3'- cuuUGCCGu-----CAGCGGa----GGGGC----GGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 52058 | 0.66 | 0.715063 |
Target: 5'- uGggGCGcGaCuGUCGCgUggCCGCCCGCu -3' miRNA: 3'- -CuuUGC-C-GuCAGCGgAggGGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 77250 | 0.66 | 0.715063 |
Target: 5'- cGGACGcGguGUCgGCC-CUgggcgcggCCGCCCGCg -3' miRNA: 3'- cUUUGC-CguCAG-CGGaGG--------GGCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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