miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 25457 0.67 0.666395
Target:  5'- ---cCGGCGGcgCGCCcgCCgCCuucgGCCCGCu -3'
miRNA:   3'- cuuuGCCGUCa-GCGGa-GG-GG----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 5356 0.67 0.666395
Target:  5'- --cGCGGCcc-CGCC-CCgaCGCCCGCg -3'
miRNA:   3'- cuuUGCCGucaGCGGaGGg-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 100380 0.67 0.666395
Target:  5'- -cAACGaGCuG-CGCCUCaCCCGCgaCGCg -3'
miRNA:   3'- cuUUGC-CGuCaGCGGAG-GGGCGg-GCG- -5'
5499 5' -60.8 NC_001798.1 + 59831 0.67 0.666395
Target:  5'- uGggGCGccGCGGUCGCCcgcgUCCgGCUCGg -3'
miRNA:   3'- -CuuUGC--CGUCAGCGGa---GGGgCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 24417 0.67 0.665412
Target:  5'- -cGGCGGC-GUCGCCggCCgacgagcgcgcggUGCCCGCc -3'
miRNA:   3'- cuUUGCCGuCAGCGGagGG-------------GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 49316 0.66 0.685995
Target:  5'- --cACGGCGacGUgGCgUUCCCCacccuGCCCGCc -3'
miRNA:   3'- cuuUGCCGU--CAgCG-GAGGGG-----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 80896 0.66 0.685995
Target:  5'- ---cUGGCGG-CGCagCUCCCgCGCCUGUc -3'
miRNA:   3'- cuuuGCCGUCaGCG--GAGGG-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 11179 0.66 0.705428
Target:  5'- gGggGCGGUGGggcggGCCUgCCgaacgGCCCGCu -3'
miRNA:   3'- -CuuUGCCGUCag---CGGAgGGg----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 1994 0.66 0.696708
Target:  5'- --cGCGGUccAGUUGCCcgCCCaggcggccguggcggGCCCGCa -3'
miRNA:   3'- cuuUGCCG--UCAGCGGa-GGGg--------------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 150678 0.66 0.695736
Target:  5'- --cGCGGCGucuUCGCC-CaCCCGCgCGCc -3'
miRNA:   3'- cuuUGCCGUc--AGCGGaG-GGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 135575 0.66 0.695736
Target:  5'- -cAACGGCAuaCGCCcgcgCCUCGCCCc- -3'
miRNA:   3'- cuUUGCCGUcaGCGGa---GGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 122001 0.66 0.695736
Target:  5'- ---cCGGC-GUCGCCUCggggcUCCGCCaggGCg -3'
miRNA:   3'- cuuuGCCGuCAGCGGAG-----GGGCGGg--CG- -5'
5499 5' -60.8 NC_001798.1 + 75282 0.66 0.695736
Target:  5'- --cGCGGCGcgcGaUGCCgCCCUGgCCCGCg -3'
miRNA:   3'- cuuUGCCGU---CaGCGGaGGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 55777 0.66 0.695736
Target:  5'- --cGCuGCAGcCGCCga-CCGCCUGCu -3'
miRNA:   3'- cuuUGcCGUCaGCGGaggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 3807 0.66 0.695736
Target:  5'- cGAACcgGGCccgCGCCUCCuCCGCCUcggGCg -3'
miRNA:   3'- cUUUG--CCGucaGCGGAGG-GGCGGG---CG- -5'
5499 5' -60.8 NC_001798.1 + 3129 0.66 0.695736
Target:  5'- --cGCGGCc--CGCCUCCgCgCGCCgGCc -3'
miRNA:   3'- cuuUGCCGucaGCGGAGG-G-GCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 92931 0.66 0.695736
Target:  5'- ----aGGCGGUCGUCgggCCCG-CCGCc -3'
miRNA:   3'- cuuugCCGUCAGCGGag-GGGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 51632 0.66 0.695736
Target:  5'- ---gUGGgGGUCaugcacuuuGCCUCCCCGgCCGa -3'
miRNA:   3'- cuuuGCCgUCAG---------CGGAGGGGCgGGCg -5'
5499 5' -60.8 NC_001798.1 + 92106 0.66 0.689897
Target:  5'- -cGACGGCGGgcagcagCcgucgaccacgcgcgGCCUCCCCcGUCUGCc -3'
miRNA:   3'- cuUUGCCGUCa------G---------------CGGAGGGG-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 129739 0.66 0.686971
Target:  5'- -cAACGGCGGgaccccgacguggccCGCCcUCCUGCCaCGCu -3'
miRNA:   3'- cuUUGCCGUCa--------------GCGGaGGGGCGG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.