Results 121 - 140 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5499 | 5' | -60.8 | NC_001798.1 | + | 91478 | 0.67 | 0.640769 |
Target: 5'- uGGGAUGGCGGU-GCCgauguuccCCCCGgcucuuaccggcggaCCCGCg -3' miRNA: 3'- -CUUUGCCGUCAgCGGa-------GGGGC---------------GGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 23005 | 0.67 | 0.63682 |
Target: 5'- cGGACGGC-GUCGUCUCgCCGCggcaGCu -3' miRNA: 3'- cUUUGCCGuCAGCGGAGgGGCGgg--CG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 70123 | 0.67 | 0.666395 |
Target: 5'- ---cCGGCGccCGCCggcaugacccCCCCGUCCGCu -3' miRNA: 3'- cuuuGCCGUcaGCGGa---------GGGGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 4907 | 0.67 | 0.676212 |
Target: 5'- cGggGCcGcCGGUCGUCUCCgCCgcgGCCCGg -3' miRNA: 3'- -CuuUGcC-GUCAGCGGAGG-GG---CGGGCg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 75707 | 0.67 | 0.676212 |
Target: 5'- uGGAuCuGCAGcugcgCGCCgCCCCGCCgGCc -3' miRNA: 3'- -CUUuGcCGUCa----GCGGaGGGGCGGgCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 75282 | 0.66 | 0.695736 |
Target: 5'- --cGCGGCGcgcGaUGCCgCCCUGgCCCGCg -3' miRNA: 3'- cuuUGCCGU---CaGCGGaGGGGC-GGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 55777 | 0.66 | 0.695736 |
Target: 5'- --cGCuGCAGcCGCCga-CCGCCUGCu -3' miRNA: 3'- cuuUGcCGUCaGCGGaggGGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 3807 | 0.66 | 0.695736 |
Target: 5'- cGAACcgGGCccgCGCCUCCuCCGCCUcggGCg -3' miRNA: 3'- cUUUG--CCGucaGCGGAGG-GGCGGG---CG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 3129 | 0.66 | 0.695736 |
Target: 5'- --cGCGGCc--CGCCUCCgCgCGCCgGCc -3' miRNA: 3'- cuuUGCCGucaGCGGAGG-G-GCGGgCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 92931 | 0.66 | 0.695736 |
Target: 5'- ----aGGCGGUCGUCgggCCCG-CCGCc -3' miRNA: 3'- cuuugCCGUCAGCGGag-GGGCgGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 51632 | 0.66 | 0.695736 |
Target: 5'- ---gUGGgGGUCaugcacuuuGCCUCCCCGgCCGa -3' miRNA: 3'- cuuuGCCgUCAG---------CGGAGGGGCgGGCg -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 92106 | 0.66 | 0.689897 |
Target: 5'- -cGACGGCGGgcagcagCcgucgaccacgcgcgGCCUCCCCcGUCUGCc -3' miRNA: 3'- cuUUGCCGUCa------G---------------CGGAGGGG-CGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 129739 | 0.66 | 0.686971 |
Target: 5'- -cAACGGCGGgaccccgacguggccCGCCcUCCUGCCaCGCu -3' miRNA: 3'- cuUUGCCGUCa--------------GCGGaGGGGCGG-GCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 80896 | 0.66 | 0.685995 |
Target: 5'- ---cUGGCGG-CGCagCUCCCgCGCCUGUc -3' miRNA: 3'- cuuuGCCGUCaGCG--GAGGG-GCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 49316 | 0.66 | 0.685995 |
Target: 5'- --cACGGCGacGUgGCgUUCCCCacccuGCCCGCc -3' miRNA: 3'- cuuUGCCGU--CAgCG-GAGGGG-----CGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 39549 | 0.66 | 0.685995 |
Target: 5'- -cGugGGUGG-CGCCggggCCguCCGUCCGCg -3' miRNA: 3'- cuUugCCGUCaGCGGa---GG--GGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 85935 | 0.66 | 0.685995 |
Target: 5'- gGggGCGGagaCAGcUGCUgcacgcgcgCCgCCGCCCGCa -3' miRNA: 3'- -CuuUGCC---GUCaGCGGa--------GG-GGCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 81286 | 0.66 | 0.685018 |
Target: 5'- gGGGAUGGCGGaUCGggucccgaggaccCCgcugCCCCcCCCGCa -3' miRNA: 3'- -CUUUGCCGUC-AGC-------------GGa---GGGGcGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 24337 | 0.66 | 0.682086 |
Target: 5'- -cGACGGCGGcgaCGCCaaccgCCacgacggcgacgaCGCCCGCg -3' miRNA: 3'- cuUUGCCGUCa--GCGGa----GGg------------GCGGGCG- -5' |
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5499 | 5' | -60.8 | NC_001798.1 | + | 31661 | 0.67 | 0.676212 |
Target: 5'- gGAcGCGGCcGg-GCCcgCgCCGCCCGCc -3' miRNA: 3'- -CUuUGCCGuCagCGGa-GgGGCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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