miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 3' -61.6 NC_001798.1 + 125248 0.67 0.600194
Target:  5'- cGUUGC-GUUGGGGCacgGCGUCCuCCGg -3'
miRNA:   3'- aCGACGaCAACCCCGg--CGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 96148 0.67 0.600194
Target:  5'- aGCacgGCcggGUgacucgccaUGGcGGCCGCGCCC-CCGg -3'
miRNA:   3'- aCGa--CGa--CA---------ACC-CCGGCGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 135278 0.67 0.600194
Target:  5'- cGC-GCUGgUGGcGGCCGC-CCCcUCGg -3'
miRNA:   3'- aCGaCGACaACC-CCGGCGuGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 62818 0.67 0.580447
Target:  5'- cGCaGCUGU--GGGCCcacGCGCCC-CCGc -3'
miRNA:   3'- aCGaCGACAacCCCGG---CGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 32566 0.67 0.580447
Target:  5'- -cCUGCUGc--GGGCCGCGgCCC-CCGc -3'
miRNA:   3'- acGACGACaacCCCGGCGU-GGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 121546 0.67 0.580447
Target:  5'- cGCUGCgccUGgcgUGGGGCCcgugggcgaccuGUGCCCGCg- -3'
miRNA:   3'- aCGACG---ACa--ACCCCGG------------CGUGGGUGgc -5'
5500 3' -61.6 NC_001798.1 + 24473 0.67 0.570622
Target:  5'- gUGCUcGCcGcccUGGGgcgccugagcGCCGCGCCCGCCu -3'
miRNA:   3'- -ACGA-CGaCa--ACCC----------CGGCGUGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 48359 0.68 0.551102
Target:  5'- cGCgGCcGcccGGGGCCGC-CCCGCgGg -3'
miRNA:   3'- aCGaCGaCaa-CCCCGGCGuGGGUGgC- -5'
5500 3' -61.6 NC_001798.1 + 22346 0.68 0.551102
Target:  5'- cGCggGCgucggGgcGGGGCCGCGCauaaugcgguuCCACCu -3'
miRNA:   3'- aCGa-CGa----CaaCCCCGGCGUG-----------GGUGGc -5'
5500 3' -61.6 NC_001798.1 + 57158 0.68 0.551102
Target:  5'- cGCggGCUGgcgcccGGGCCgGCGCCCuCCGc -3'
miRNA:   3'- aCGa-CGACaac---CCCGG-CGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 31865 0.68 0.551102
Target:  5'- cGCcGCgGagGGGGCgGCGgCCCGCCc -3'
miRNA:   3'- aCGaCGaCaaCCCCGgCGU-GGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 16221 0.68 0.541418
Target:  5'- cGCcGcCUGUgggggggcggUGGGGCCGgggcccucccCGCCCACCu -3'
miRNA:   3'- aCGaC-GACA----------ACCCCGGC----------GUGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 149459 0.68 0.531791
Target:  5'- gUGCggcgGCUccacgcgGGGGCCGCGgCCCGCa- -3'
miRNA:   3'- -ACGa---CGAcaa----CCCCGGCGU-GGGUGgc -5'
5500 3' -61.6 NC_001798.1 + 77526 0.68 0.512729
Target:  5'- gGCacgagGCUGgguucgGGGGCCuGCugCaCGCCGa -3'
miRNA:   3'- aCGa----CGACaa----CCCCGG-CGugG-GUGGC- -5'
5500 3' -61.6 NC_001798.1 + 39995 0.68 0.511783
Target:  5'- cGCUGCUGUcggacucGGGGUCGUcgcggcgGCCCuCCu -3'
miRNA:   3'- aCGACGACAa------CCCCGGCG-------UGGGuGGc -5'
5500 3' -61.6 NC_001798.1 + 23567 0.68 0.493954
Target:  5'- cGCgaggGCcccgGGGGCgGCGCCCcgGCCGa -3'
miRNA:   3'- aCGa---CGacaaCCCCGgCGUGGG--UGGC- -5'
5500 3' -61.6 NC_001798.1 + 44913 0.68 0.493954
Target:  5'- gUGCUGUgcgGUUGGGGaaCGCGCCC-Cg- -3'
miRNA:   3'- -ACGACGa--CAACCCCg-GCGUGGGuGgc -5'
5500 3' -61.6 NC_001798.1 + 60154 0.69 0.484685
Target:  5'- cGUcuugGC-GUUGGcGGCCGCuugGCCCGCCu -3'
miRNA:   3'- aCGa---CGaCAACC-CCGGCG---UGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 27167 0.69 0.484685
Target:  5'- gGCUGCUGcgagcucGGGGCCGCGggCGCgGg -3'
miRNA:   3'- aCGACGACaa-----CCCCGGCGUggGUGgC- -5'
5500 3' -61.6 NC_001798.1 + 116528 0.69 0.466402
Target:  5'- cGCUGCUGcaccgcgGGGGuCCGCuuCgACCGc -3'
miRNA:   3'- aCGACGACaa-----CCCC-GGCGugGgUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.