Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5501 | 5' | -48.7 | NC_001798.1 | + | 81428 | 0.66 | 0.998893 |
Target: 5'- uGGAGGAgcuggcgucCGAcg-AcgCCGGCGGcCCCa -3' miRNA: 3'- -CUUCCU---------GCUuuaUuaGGCCGCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 97535 | 0.66 | 0.998893 |
Target: 5'- gGggGGGCGGAGgcguggCgCGGgGAcgCCCg -3' miRNA: 3'- -CuuCCUGCUUUauua--G-GCCgCUa-GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 149400 | 0.66 | 0.998893 |
Target: 5'- cGggGGGCGucgGGUAGUCgGGgGGcCUCa -3' miRNA: 3'- -CuuCCUGCu--UUAUUAGgCCgCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 152049 | 0.66 | 0.998957 |
Target: 5'- cGggGGGCGGcgcacggcccaCGGgGGUCCCc -3' miRNA: 3'- -CuuCCUGCUuuauuag----GCCgCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 15288 | 0.66 | 0.999094 |
Target: 5'- --cGGGCGuggcGGUGGUCgCGGCGA-CCg -3' miRNA: 3'- cuuCCUGCu---UUAUUAG-GCCGCUaGGg -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 25544 | 0.66 | 0.999094 |
Target: 5'- cGGAGGACG---UGcgCgUGGUGAUCCUc -3' miRNA: 3'- -CUUCCUGCuuuAUuaG-GCCGCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 35389 | 0.66 | 0.999094 |
Target: 5'- gGAAGGGCGug--GggCCGGCcgccgGAUgCCCg -3' miRNA: 3'- -CUUCCUGCuuuaUuaGGCCG-----CUA-GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 149306 | 0.66 | 0.999094 |
Target: 5'- cGGAGGcCGugGaAGUCCaGCGcgCCCa -3' miRNA: 3'- -CUUCCuGCuuUaUUAGGcCGCuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 28193 | 0.66 | 0.999263 |
Target: 5'- cGAGGGCGggGggaagGcgCCGGaGGcCCCg -3' miRNA: 3'- cUUCCUGCuuUa----UuaGGCCgCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 147133 | 0.66 | 0.998849 |
Target: 5'- cGGAGGcuuuuuuCGAuucccggCCGGgGGUCCCg -3' miRNA: 3'- -CUUCCu------GCUuuauua-GGCCgCUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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