miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 59860 0.67 0.998656
Target:  5'- cGGAGGAgGAGuccuggcuGUGGUCgGGCcggCCCg -3'
miRNA:   3'- -CUUCCUgCUU--------UAUUAGgCCGcuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 61173 0.67 0.998049
Target:  5'- gGggGGAagagaGAGAUGGUcggccugcaCCGGCGcgCgCCg -3'
miRNA:   3'- -CuuCCUg----CUUUAUUA---------GGCCGCuaG-GG- -5'
5501 5' -48.7 NC_001798.1 + 65742 0.68 0.996137
Target:  5'- cAGGGcCGgcAUGAUgCUGGCGGUgCCg -3'
miRNA:   3'- cUUCCuGCuuUAUUA-GGCCGCUAgGG- -5'
5501 5' -48.7 NC_001798.1 + 65941 0.68 0.99672
Target:  5'- cGggGGugGAcggcacGAUCUGGUGGUCg- -3'
miRNA:   3'- -CuuCCugCUuua---UUAGGCCGCUAGgg -5'
5501 5' -48.7 NC_001798.1 + 66696 0.69 0.991825
Target:  5'- aGggGGACuGGGUAG-CCGGgGuccguUCCCa -3'
miRNA:   3'- -CuuCCUGcUUUAUUaGGCCgCu----AGGG- -5'
5501 5' -48.7 NC_001798.1 + 70506 0.68 0.99672
Target:  5'- cAAGGACac---GGUCCuGGCGAUCaCCg -3'
miRNA:   3'- cUUCCUGcuuuaUUAGG-CCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 74565 0.69 0.989283
Target:  5'- gGggGGACGGAGaAGgcucgggcCCGGUcGUCCCc -3'
miRNA:   3'- -CuuCCUGCUUUaUUa-------GGCCGcUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 74864 0.69 0.989283
Target:  5'- uGGAGGugGggGcAGUgCCGGUgGGUCgCCa -3'
miRNA:   3'- -CUUCCugCuuUaUUA-GGCCG-CUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 75870 0.66 0.999521
Target:  5'- -cGGGGCGAAGagaugcgGGUCgaGGCGGaggCCCg -3'
miRNA:   3'- cuUCCUGCUUUa------UUAGg-CCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 76063 0.69 0.990622
Target:  5'- uGGAGGACGugcgGAUCCaggcccgccgGGCGAUCg- -3'
miRNA:   3'- -CUUCCUGCuuuaUUAGG----------CCGCUAGgg -5'
5501 5' -48.7 NC_001798.1 + 79509 0.68 0.994718
Target:  5'- -cGGGGCGAGgcGUAucugcgcgCCGGCGGagaCCCg -3'
miRNA:   3'- cuUCCUGCUU--UAUua------GGCCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 81428 0.66 0.998893
Target:  5'- uGGAGGAgcuggcgucCGAcg-AcgCCGGCGGcCCCa -3'
miRNA:   3'- -CUUCCU---------GCUuuaUuaGGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 85287 0.73 0.921155
Target:  5'- gGggGGGCGggGgccggGGUCCGcccGCGG-CCCg -3'
miRNA:   3'- -CuuCCUGCuuUa----UUAGGC---CGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 85827 0.67 0.998049
Target:  5'- gGggGGGCGggGg---CgGGCGGgggCUCg -3'
miRNA:   3'- -CuuCCUGCuuUauuaGgCCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 86645 0.68 0.994718
Target:  5'- cGAGGGGCGGGucuguAUAGcCCuGCGggCCCu -3'
miRNA:   3'- -CUUCCUGCUU-----UAUUaGGcCGCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 90076 0.66 0.999521
Target:  5'- -cAGGACGAcggGggCCGGCaGGcCCCu -3'
miRNA:   3'- cuUCCUGCUuuaUuaGGCCG-CUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 90394 0.76 0.833696
Target:  5'- cGggGGGCGcgGUugggCCGGCGcguUCCCg -3'
miRNA:   3'- -CuuCCUGCuuUAuua-GGCCGCu--AGGG- -5'
5501 5' -48.7 NC_001798.1 + 93369 0.69 0.991595
Target:  5'- --uGGACGAcgccgggCCGGCGGaCCCc -3'
miRNA:   3'- cuuCCUGCUuuauua-GGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 95377 0.72 0.955477
Target:  5'- cGGAGGGCGggG-----CGGCGGUCgCCa -3'
miRNA:   3'- -CUUCCUGCuuUauuagGCCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 95689 0.68 0.994718
Target:  5'- -cGGcGGCGggGgcggCCGGCGucgCCCg -3'
miRNA:   3'- cuUC-CUGCuuUauuaGGCCGCua-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.