miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 97535 0.66 0.998893
Target:  5'- gGggGGGCGGAGgcguggCgCGGgGAcgCCCg -3'
miRNA:   3'- -CuuCCUGCUUUauua--G-GCCgCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 99630 0.67 0.997668
Target:  5'- --uGGACGAGAUGcUCCgcgccgaguacGGCGGcUCCUu -3'
miRNA:   3'- cuuCCUGCUUUAUuAGG-----------CCGCU-AGGG- -5'
5501 5' -48.7 NC_001798.1 + 102023 0.66 0.999263
Target:  5'- cGGGGuaGCGggGUGGUUgGGCGGgggUCuCCg -3'
miRNA:   3'- cUUCC--UGCuuUAUUAGgCCGCU---AG-GG- -5'
5501 5' -48.7 NC_001798.1 + 102064 0.67 0.997228
Target:  5'- uGggGGugGugGUAGggccccaCCGGCGGauacggCCCg -3'
miRNA:   3'- -CuuCCugCuuUAUUa------GGCCGCUa-----GGG- -5'
5501 5' -48.7 NC_001798.1 + 102647 0.66 0.999404
Target:  5'- cGGGcGGCGGAGggg-CCGGgGcgCCCg -3'
miRNA:   3'- cUUC-CUGCUUUauuaGGCCgCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 102879 0.87 0.320219
Target:  5'- uGAAGGuACGugu--GUCCGGCGAUCCCg -3'
miRNA:   3'- -CUUCC-UGCuuuauUAGGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 104894 0.66 0.999521
Target:  5'- cGAAGG-CGGAAUAGU--GGCGcuggCCCa -3'
miRNA:   3'- -CUUCCuGCUUUAUUAggCCGCua--GGG- -5'
5501 5' -48.7 NC_001798.1 + 105743 0.67 0.998656
Target:  5'- -cGGGugGGugucg-CCGGCGAcaaaugagUCCCc -3'
miRNA:   3'- cuUCCugCUuuauuaGGCCGCU--------AGGG- -5'
5501 5' -48.7 NC_001798.1 + 106070 0.69 0.992903
Target:  5'- aGggGGGCcuuugcGGUCUGGCGGUCgCg -3'
miRNA:   3'- -CuuCCUGcuuua-UUAGGCCGCUAGgG- -5'
5501 5' -48.7 NC_001798.1 + 113821 0.68 0.99672
Target:  5'- cGGGGACaGAGG-AcgCCGGCcGGUCCUc -3'
miRNA:   3'- cUUCCUG-CUUUaUuaGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 116605 0.66 0.999521
Target:  5'- --cGGugaGGAGUGc-CCGaGCGAUCCCg -3'
miRNA:   3'- cuuCCug-CUUUAUuaGGC-CGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 120393 0.68 0.994718
Target:  5'- --cGGGCGAu---GUCCgcgggGGcCGAUCCCg -3'
miRNA:   3'- cuuCCUGCUuuauUAGG-----CC-GCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 122233 0.68 0.996137
Target:  5'- -cGGGugGGAAgcucuggCCGGCGGcgaccggCCCg -3'
miRNA:   3'- cuUCCugCUUUauua---GGCCGCUa------GGG- -5'
5501 5' -48.7 NC_001798.1 + 125256 0.66 0.999521
Target:  5'- uGGGGcACGgcGUccUCCGGCGcgcacUCCCg -3'
miRNA:   3'- cUUCC-UGCuuUAuuAGGCCGCu----AGGG- -5'
5501 5' -48.7 NC_001798.1 + 127511 0.68 0.99672
Target:  5'- cGGAGGGC------AUCCGGCGccaccuucgcaAUCCCa -3'
miRNA:   3'- -CUUCCUGcuuuauUAGGCCGC-----------UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 127949 0.68 0.996137
Target:  5'- --cGGGCGAAAaGGcCCGGCccgcGUCCCc -3'
miRNA:   3'- cuuCCUGCUUUaUUaGGCCGc---UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 128075 0.67 0.997228
Target:  5'- --cGGAccccgaccCGAuGUGGUCggcguCGGCGAUCCCc -3'
miRNA:   3'- cuuCCU--------GCUuUAUUAG-----GCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 128867 0.69 0.990622
Target:  5'- cGAGGACcuGAUGG-CgCGGCGAUCgCCg -3'
miRNA:   3'- cUUCCUGcuUUAUUaG-GCCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 131377 0.67 0.998656
Target:  5'- cGggGGAuccccUGggGgc--CCGGCG-UCCCa -3'
miRNA:   3'- -CuuCCU-----GCuuUauuaGGCCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 136003 0.7 0.986163
Target:  5'- cGGGGGCGggG-AGUCgguCGGCG-UCCCc -3'
miRNA:   3'- cUUCCUGCuuUaUUAG---GCCGCuAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.