Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5501 | 5' | -48.7 | NC_001798.1 | + | 137030 | 0.75 | 0.853859 |
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Target: 5'- uGAGGACGAcgaccgcaaaaccgcGAUAcgUCGGCuGGUCCCc -3' miRNA: 3'- cUUCCUGCU---------------UUAUuaGGCCG-CUAGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 138541 | 0.66 | 0.999521 |
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Target: 5'- uGAAcGGGCGAAucgAAgaCCaGGCGGUCgCCg -3' miRNA: 3'- -CUU-CCUGCUUua-UUa-GG-CCGCUAG-GG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 141211 | 0.7 | 0.9878 |
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Target: 5'- -cGGGACGggGgc--CCGGaCGAcuUCCCc -3' miRNA: 3'- cuUCCUGCuuUauuaGGCC-GCU--AGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 147133 | 0.66 | 0.998849 |
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Target: 5'- cGGAGGcuuuuuuCGAuucccggCCGGgGGUCCCg -3' miRNA: 3'- -CUUCCu------GCUuuauua-GGCCgCUAGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 147184 | 0.71 | 0.966771 |
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Target: 5'- --cGGGCGGAAggcgucccccgcCCGGCGGUCCg -3' miRNA: 3'- cuuCCUGCUUUauua--------GGCCGCUAGGg -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 149306 | 0.66 | 0.999094 |
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Target: 5'- cGGAGGcCGugGaAGUCCaGCGcgCCCa -3' miRNA: 3'- -CUUCCuGCuuUaUUAGGcCGCuaGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 149400 | 0.66 | 0.998893 |
|
Target: 5'- cGggGGGCGucgGGUAGUCgGGgGGcCUCa -3' miRNA: 3'- -CuuCCUGCu--UUAUUAGgCCgCUaGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 152049 | 0.66 | 0.998957 |
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Target: 5'- cGggGGGCGGcgcacggcccaCGGgGGUCCCc -3' miRNA: 3'- -CuuCCUGCUuuauuag----GCCgCUAGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 152521 | 0.69 | 0.992903 |
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Target: 5'- cGGGGGCGGAGggagggAAUCCcccccucucggGGCGGcCCCg -3' miRNA: 3'- cUUCCUGCUUUa-----UUAGG-----------CCGCUaGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 153968 | 0.67 | 0.998656 |
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Target: 5'- cGAGGACGcgg----CCGGCGcgCUCu -3' miRNA: 3'- cUUCCUGCuuuauuaGGCCGCuaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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