Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5501 | 5' | -48.7 | NC_001798.1 | + | 14995 | 0.68 | 0.99672 |
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Target: 5'- gGggGGGCGAGGcguGUUgggGGCGAgcggCCCa -3' miRNA: 3'- -CuuCCUGCUUUau-UAGg--CCGCUa---GGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 12712 | 0.66 | 0.999404 |
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Target: 5'- gGggGcGGCGGGggcGUGGUgCGGCGcgacGUCCUg -3' miRNA: 3'- -CuuC-CUGCUU---UAUUAgGCCGC----UAGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 9172 | 0.68 | 0.993864 |
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Target: 5'- cGggGGGCaGGGUc-UCUGGCgGGUCCCc -3' miRNA: 3'- -CuuCCUGcUUUAuuAGGCCG-CUAGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 7194 | 0.68 | 0.995473 |
|
Target: 5'- cGggGcGGCGAccAUGAUCCGGCGGc--- -3' miRNA: 3'- -CuuC-CUGCUu-UAUUAGGCCGCUaggg -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 6612 | 0.74 | 0.901918 |
|
Target: 5'- gGggGGACGggGggacgggCCGGggggacggggcccCGAUCCCa -3' miRNA: 3'- -CuuCCUGCuuUauua---GGCC-------------GCUAGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 5925 | 0.74 | 0.917624 |
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Target: 5'- cGggGGGCGGGccguuccucgcgcacAUAAagggCCGGCG-UCCCg -3' miRNA: 3'- -CuuCCUGCUU---------------UAUUa---GGCCGCuAGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 4863 | 0.68 | 0.99672 |
|
Target: 5'- -cGGGuuCGggGUGGg-CGGCGGUCCg -3' miRNA: 3'- cuUCCu-GCuuUAUUagGCCGCUAGGg -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 3892 | 0.66 | 0.999521 |
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Target: 5'- cGGGGGCGggGgg--CCGGC---CCCg -3' miRNA: 3'- cUUCCUGCuuUauuaGGCCGcuaGGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 2606 | 0.68 | 0.99672 |
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Target: 5'- cGggGGGCGcgGggcgccgcCCGGCGGcgCCCu -3' miRNA: 3'- -CuuCCUGCuuUauua----GGCCGCUa-GGG- -5' |
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| 5501 | 5' | -48.7 | NC_001798.1 | + | 2575 | 0.67 | 0.998656 |
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Target: 5'- -cGGGGCGggGggcGUCCGcGCGG-CUCu -3' miRNA: 3'- cuUCCUGCuuUau-UAGGC-CGCUaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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