Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5501 | 5' | -48.7 | NC_001798.1 | + | 116605 | 0.66 | 0.999521 |
Target: 5'- --cGGugaGGAGUGc-CCGaGCGAUCCCg -3' miRNA: 3'- cuuCCug-CUUUAUuaGGC-CGCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 75870 | 0.66 | 0.999521 |
Target: 5'- -cGGGGCGAAGagaugcgGGUCgaGGCGGaggCCCg -3' miRNA: 3'- cuUCCUGCUUUa------UUAGg-CCGCUa--GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 90076 | 0.66 | 0.999521 |
Target: 5'- -cAGGACGAcggGggCCGGCaGGcCCCu -3' miRNA: 3'- cuUCCUGCUuuaUuaGGCCG-CUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 104894 | 0.66 | 0.999521 |
Target: 5'- cGAAGG-CGGAAUAGU--GGCGcuggCCCa -3' miRNA: 3'- -CUUCCuGCUUUAUUAggCCGCua--GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 125256 | 0.66 | 0.999521 |
Target: 5'- uGGGGcACGgcGUccUCCGGCGcgcacUCCCg -3' miRNA: 3'- cUUCC-UGCuuUAuuAGGCCGCu----AGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 28193 | 0.66 | 0.999263 |
Target: 5'- cGAGGGCGggGggaagGcgCCGGaGGcCCCg -3' miRNA: 3'- cUUCCUGCuuUa----UuaGGCCgCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 149306 | 0.66 | 0.999094 |
Target: 5'- cGGAGGcCGugGaAGUCCaGCGcgCCCa -3' miRNA: 3'- -CUUCCuGCuuUaUUAGGcCGCuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 59860 | 0.67 | 0.998656 |
Target: 5'- cGGAGGAgGAGuccuggcuGUGGUCgGGCcggCCCg -3' miRNA: 3'- -CUUCCUgCUU--------UAUUAGgCCGcuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 105743 | 0.67 | 0.998656 |
Target: 5'- -cGGGugGGugucg-CCGGCGAcaaaugagUCCCc -3' miRNA: 3'- cuUCCugCUuuauuaGGCCGCU--------AGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 131377 | 0.67 | 0.998656 |
Target: 5'- cGggGGAuccccUGggGgc--CCGGCG-UCCCa -3' miRNA: 3'- -CuuCCU-----GCuuUauuaGGCCGCuAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 153968 | 0.67 | 0.998656 |
Target: 5'- cGAGGACGcgg----CCGGCGcgCUCu -3' miRNA: 3'- cUUCCUGCuuuauuaGGCCGCuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 147133 | 0.66 | 0.998849 |
Target: 5'- cGGAGGcuuuuuuCGAuucccggCCGGgGGUCCCg -3' miRNA: 3'- -CUUCCu------GCUuuauua-GGCCgCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 17670 | 0.66 | 0.998893 |
Target: 5'- gGAGGGguaggaucGCGggGUGGUUCaGGCG-UCUCa -3' miRNA: 3'- -CUUCC--------UGCuuUAUUAGG-CCGCuAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 81428 | 0.66 | 0.998893 |
Target: 5'- uGGAGGAgcuggcgucCGAcg-AcgCCGGCGGcCCCa -3' miRNA: 3'- -CUUCCU---------GCUuuaUuaGGCCGCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 97535 | 0.66 | 0.998893 |
Target: 5'- gGggGGGCGGAGgcguggCgCGGgGAcgCCCg -3' miRNA: 3'- -CuuCCUGCUUUauua--G-GCCgCUa-GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 149400 | 0.66 | 0.998893 |
Target: 5'- cGggGGGCGucgGGUAGUCgGGgGGcCUCa -3' miRNA: 3'- -CuuCCUGCu--UUAUUAGgCCgCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 152049 | 0.66 | 0.998957 |
Target: 5'- cGggGGGCGGcgcacggcccaCGGgGGUCCCc -3' miRNA: 3'- -CuuCCUGCUuuauuag----GCCgCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 15288 | 0.66 | 0.999094 |
Target: 5'- --cGGGCGuggcGGUGGUCgCGGCGA-CCg -3' miRNA: 3'- cuuCCUGCu---UUAUUAG-GCCGCUaGGg -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 25544 | 0.66 | 0.999094 |
Target: 5'- cGGAGGACG---UGcgCgUGGUGAUCCUc -3' miRNA: 3'- -CUUCCUGCuuuAUuaG-GCCGCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 35389 | 0.66 | 0.999094 |
Target: 5'- gGAAGGGCGug--GggCCGGCcgccgGAUgCCCg -3' miRNA: 3'- -CUUCCUGCuuuaUuaGGCCG-----CUA-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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