Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5501 | 5' | -48.7 | NC_001798.1 | + | 3892 | 0.66 | 0.999521 |
Target: 5'- cGGGGGCGggGgg--CCGGC---CCCg -3' miRNA: 3'- cUUCCUGCuuUauuaGGCCGcuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 12712 | 0.66 | 0.999404 |
Target: 5'- gGggGcGGCGGGggcGUGGUgCGGCGcgacGUCCUg -3' miRNA: 3'- -CuuC-CUGCUU---UAUUAgGCCGC----UAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 102647 | 0.66 | 0.999404 |
Target: 5'- cGGGcGGCGGAGggg-CCGGgGcgCCCg -3' miRNA: 3'- cUUC-CUGCUUUauuaGGCCgCuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 44719 | 0.66 | 0.999404 |
Target: 5'- aGGAGGGCGAGcgAGga-GGUGAUaacgcaCCCg -3' miRNA: 3'- -CUUCCUGCUUuaUUaggCCGCUA------GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 102023 | 0.66 | 0.999263 |
Target: 5'- cGGGGuaGCGggGUGGUUgGGCGGgggUCuCCg -3' miRNA: 3'- cUUCC--UGCuuUAUUAGgCCGCU---AG-GG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 99630 | 0.67 | 0.997668 |
Target: 5'- --uGGACGAGAUGcUCCgcgccgaguacGGCGGcUCCUu -3' miRNA: 3'- cuuCCUGCUUUAUuAGG-----------CCGCU-AGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 57465 | 0.67 | 0.997668 |
Target: 5'- uGggGGGCGggGccGGUuuGGCGGUggaggCCUu -3' miRNA: 3'- -CuuCCUGCuuUa-UUAggCCGCUA-----GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 128075 | 0.67 | 0.997228 |
Target: 5'- --cGGAccccgaccCGAuGUGGUCggcguCGGCGAUCCCc -3' miRNA: 3'- cuuCCU--------GCUuUAUUAG-----GCCGCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 102064 | 0.67 | 0.997228 |
Target: 5'- uGggGGugGugGUAGggccccaCCGGCGGauacggCCCg -3' miRNA: 3'- -CuuCCugCuuUAUUa------GGCCGCUa-----GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 59003 | 0.67 | 0.997033 |
Target: 5'- gGggGGcGCGGAGgaaccccaggCCGGUGcUCCCg -3' miRNA: 3'- -CuuCC-UGCUUUauua------GGCCGCuAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 61173 | 0.67 | 0.998049 |
Target: 5'- gGggGGAagagaGAGAUGGUcggccugcaCCGGCGcgCgCCg -3' miRNA: 3'- -CuuCCUg----CUUUAUUA---------GGCCGCuaG-GG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 85827 | 0.67 | 0.998049 |
Target: 5'- gGggGGGCGggGg---CgGGCGGgggCUCg -3' miRNA: 3'- -CuuCCUGCuuUauuaGgCCGCUa--GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 22776 | 0.67 | 0.998493 |
Target: 5'- cGggGGACGucuccgggccgcggcGGAgacgaCCGGCGGcCCCg -3' miRNA: 3'- -CuuCCUGC---------------UUUauua-GGCCGCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 2575 | 0.67 | 0.998656 |
Target: 5'- -cGGGGCGggGggcGUCCGcGCGG-CUCu -3' miRNA: 3'- cuUCCUGCuuUau-UAGGC-CGCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 59860 | 0.67 | 0.998656 |
Target: 5'- cGGAGGAgGAGuccuggcuGUGGUCgGGCcggCCCg -3' miRNA: 3'- -CUUCCUgCUU--------UAUUAGgCCGcuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 105743 | 0.67 | 0.998656 |
Target: 5'- -cGGGugGGugucg-CCGGCGAcaaaugagUCCCc -3' miRNA: 3'- cuUCCugCUuuauuaGGCCGCU--------AGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 131377 | 0.67 | 0.998656 |
Target: 5'- cGggGGAuccccUGggGgc--CCGGCG-UCCCa -3' miRNA: 3'- -CuuCCU-----GCuuUauuaGGCCGCuAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 153968 | 0.67 | 0.998656 |
Target: 5'- cGAGGACGcgg----CCGGCGcgCUCu -3' miRNA: 3'- cUUCCUGCuuuauuaGGCCGCuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 70506 | 0.68 | 0.99672 |
Target: 5'- cAAGGACac---GGUCCuGGCGAUCaCCg -3' miRNA: 3'- cUUCCUGcuuuaUUAGG-CCGCUAG-GG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 4863 | 0.68 | 0.99672 |
Target: 5'- -cGGGuuCGggGUGGg-CGGCGGUCCg -3' miRNA: 3'- cuUCCu-GCuuUAUUagGCCGCUAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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