miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5502 3' -62.6 NC_001798.1 + 67904 0.65 0.673285
Target:  5'- -aGACCG-CCCgcguuggcuuuuauCCCCggcacacaGGGGUGggGUGc -3'
miRNA:   3'- gaCUGGCuGGG--------------GGGG--------CCCCACuuCGC- -5'
5502 3' -62.6 NC_001798.1 + 22073 0.66 0.666535
Target:  5'- cCUGcggccCCGcCCCCUuuGGGGcGGAGCc -3'
miRNA:   3'- -GACu----GGCuGGGGGggCCCCaCUUCGc -5'
5502 3' -62.6 NC_001798.1 + 31959 0.66 0.666535
Target:  5'- gCUcGCCccucGCCCCCCagGGGGUGggGg- -3'
miRNA:   3'- -GAcUGGc---UGGGGGGg-CCCCACuuCgc -5'
5502 3' -62.6 NC_001798.1 + 2251 0.66 0.666535
Target:  5'- -cGGCgGGCgCgCCgCCGGGGggcGggGCGg -3'
miRNA:   3'- gaCUGgCUGgG-GG-GGCCCCa--CuuCGC- -5'
5502 3' -62.6 NC_001798.1 + 39194 0.66 0.66557
Target:  5'- -cGACgGgucucggcgucaaACCCCCCCGcuuGGGUGGccAGCa -3'
miRNA:   3'- gaCUGgC-------------UGGGGGGGC---CCCACU--UCGc -5'
5502 3' -62.6 NC_001798.1 + 120319 0.66 0.66074
Target:  5'- -cGACCGccACgCgaacgcugcgaaacgCCCCGGGGUGcAGCGc -3'
miRNA:   3'- gaCUGGC--UGgG---------------GGGGCCCCACuUCGC- -5'
5502 3' -62.6 NC_001798.1 + 29952 0.66 0.66074
Target:  5'- -gGGCCGACCCCCggcccgcuuaagcggUCGGGG-GAcccccgugGGCc -3'
miRNA:   3'- gaCUGGCUGGGGG---------------GGCCCCaCU--------UCGc -5'
5502 3' -62.6 NC_001798.1 + 122257 0.66 0.656872
Target:  5'- -cGACCGGCCCgaCUGGcuGUGGAGCc -3'
miRNA:   3'- gaCUGGCUGGGggGGCCc-CACUUCGc -5'
5502 3' -62.6 NC_001798.1 + 122089 0.66 0.656872
Target:  5'- gCUGGCgGGCCuggagCCgCCCGGcGG-GggGCGc -3'
miRNA:   3'- -GACUGgCUGG-----GG-GGGCC-CCaCuuCGC- -5'
5502 3' -62.6 NC_001798.1 + 27111 0.66 0.656872
Target:  5'- gUGGCCcgaGCCCCCCCGca--GGAGCGg -3'
miRNA:   3'- gACUGGc--UGGGGGGGCcccaCUUCGC- -5'
5502 3' -62.6 NC_001798.1 + 29815 0.66 0.647191
Target:  5'- -cGAgCGGCCgccgcggcagaCCCCCGGcacGGUGAgagGGCGa -3'
miRNA:   3'- gaCUgGCUGG-----------GGGGGCC---CCACU---UCGC- -5'
5502 3' -62.6 NC_001798.1 + 9844 0.66 0.647191
Target:  5'- -aGGCCGGCgUgCUgGGGG-GAGGCGu -3'
miRNA:   3'- gaCUGGCUGgGgGGgCCCCaCUUCGC- -5'
5502 3' -62.6 NC_001798.1 + 79483 0.66 0.647191
Target:  5'- -aGGUCGACCCgcagcugcugcgCCgCCGGGGcGAGGCGu -3'
miRNA:   3'- gaCUGGCUGGG------------GG-GGCCCCaCUUCGC- -5'
5502 3' -62.6 NC_001798.1 + 66744 0.66 0.646222
Target:  5'- -aGaACCGGCgCCacguccgCCUGGGGUGcGGCGg -3'
miRNA:   3'- gaC-UGGCUGgGG-------GGGCCCCACuUCGC- -5'
5502 3' -62.6 NC_001798.1 + 108667 0.66 0.637499
Target:  5'- -cGGCCGacgcaacgcGCCgCCCCCGGGGccgcccGCGg -3'
miRNA:   3'- gaCUGGC---------UGG-GGGGGCCCCacuu--CGC- -5'
5502 3' -62.6 NC_001798.1 + 127113 0.66 0.637499
Target:  5'- -gGACCucGAgUCCCCCCGGGGguuugGGAuGCc -3'
miRNA:   3'- gaCUGG--CU-GGGGGGGCCCCa----CUU-CGc -5'
5502 3' -62.6 NC_001798.1 + 19034 0.66 0.63459
Target:  5'- ---cCCGGCCCCCaCCGgcuauaccaccuguGGGUGGucggGGCGg -3'
miRNA:   3'- gacuGGCUGGGGG-GGC--------------CCCACU----UCGC- -5'
5502 3' -62.6 NC_001798.1 + 137627 0.66 0.627803
Target:  5'- aUGAgCGcGCCCgCUCGGGGggcgcGAAGCa -3'
miRNA:   3'- gACUgGC-UGGGgGGGCCCCa----CUUCGc -5'
5502 3' -62.6 NC_001798.1 + 75971 0.66 0.624895
Target:  5'- cCUGACCGugaugcccgugcccGCCgCCCCGGGcgccGGCGg -3'
miRNA:   3'- -GACUGGC--------------UGGgGGGGCCCcacuUCGC- -5'
5502 3' -62.6 NC_001798.1 + 99262 0.66 0.618111
Target:  5'- --cACCGACCucaaguacaacCCCUCGcGGGUgGAGGCGu -3'
miRNA:   3'- gacUGGCUGG-----------GGGGGC-CCCA-CUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.