miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5502 5' -59.5 NC_001798.1 + 40500 0.66 0.756242
Target:  5'- cUguGCUGGGCCgggGGAGGggcaagcagACCCGa-- -3'
miRNA:   3'- aAguCGGCUCGGa--CCUCC---------UGGGCaag -5'
5502 5' -59.5 NC_001798.1 + 60962 0.66 0.756242
Target:  5'- gUCA-CCGGGCCcGGAGGcgcGgCCGUUUg -3'
miRNA:   3'- aAGUcGGCUCGGaCCUCC---UgGGCAAG- -5'
5502 5' -59.5 NC_001798.1 + 147475 0.66 0.717572
Target:  5'- gUgAGCCGuccGCC-GGGGGACCCa--- -3'
miRNA:   3'- aAgUCGGCu--CGGaCCUCCUGGGcaag -5'
5502 5' -59.5 NC_001798.1 + 96363 0.66 0.717572
Target:  5'- -gCGGCCGGGgCUGGAGG-CUCa--- -3'
miRNA:   3'- aaGUCGGCUCgGACCUCCuGGGcaag -5'
5502 5' -59.5 NC_001798.1 + 85074 0.66 0.705721
Target:  5'- gUC-GCCGGGCagcagcuggaaGGAGGGCgCGUUCg -3'
miRNA:   3'- aAGuCGGCUCGga---------CCUCCUGgGCAAG- -5'
5502 5' -59.5 NC_001798.1 + 9726 0.67 0.697771
Target:  5'- --gGGCUGGcGCUgggGGAGGugCUGUUCc -3'
miRNA:   3'- aagUCGGCU-CGGa--CCUCCugGGCAAG- -5'
5502 5' -59.5 NC_001798.1 + 23863 0.67 0.687786
Target:  5'- -aCAGCCGccccGGCCUcugGGGGGcGCCCGa-- -3'
miRNA:   3'- aaGUCGGC----UCGGA---CCUCC-UGGGCaag -5'
5502 5' -59.5 NC_001798.1 + 121546 0.68 0.627216
Target:  5'- ---cGCUGcGCCUGGcguGGGGCCCGUg- -3'
miRNA:   3'- aaguCGGCuCGGACC---UCCUGGGCAag -5'
5502 5' -59.5 NC_001798.1 + 28699 0.71 0.460888
Target:  5'- aUCGGaCCGuGCCUGGAGcccgaGGCCCGa-- -3'
miRNA:   3'- aAGUC-GGCuCGGACCUC-----CUGGGCaag -5'
5502 5' -59.5 NC_001798.1 + 134197 0.71 0.451763
Target:  5'- -cCGGCCgccuccccgcugGAGCCccUGGGGGACCCGa-- -3'
miRNA:   3'- aaGUCGG------------CUCGG--ACCUCCUGGGCaag -5'
5502 5' -59.5 NC_001798.1 + 20011 0.71 0.433815
Target:  5'- -cCGGCCG-GCCggGGAGGGCCCc--- -3'
miRNA:   3'- aaGUCGGCuCGGa-CCUCCUGGGcaag -5'
5502 5' -59.5 NC_001798.1 + 153227 0.72 0.40769
Target:  5'- -aCGGcCCGGGCCcgcggcggcGGAGGACCCGcgCg -3'
miRNA:   3'- aaGUC-GGCUCGGa--------CCUCCUGGGCaaG- -5'
5502 5' -59.5 NC_001798.1 + 105377 0.72 0.399202
Target:  5'- -gCAGCuCGgcGGCCUGGAGGGCggCGUUCu -3'
miRNA:   3'- aaGUCG-GC--UCGGACCUCCUGg-GCAAG- -5'
5502 5' -59.5 NC_001798.1 + 129356 0.72 0.382571
Target:  5'- ---cGCCGGGCCUGGcGGGGCCCc--- -3'
miRNA:   3'- aaguCGGCUCGGACC-UCCUGGGcaag -5'
5502 5' -59.5 NC_001798.1 + 31800 0.76 0.231313
Target:  5'- --gGGCCGGGCgCggagGGAGGACCCGgggUCc -3'
miRNA:   3'- aagUCGGCUCG-Ga---CCUCCUGGGCa--AG- -5'
5502 5' -59.5 NC_001798.1 + 95014 0.76 0.220398
Target:  5'- -gCGGCgCGGGCCUGGAGGccgggGCCCGcgCg -3'
miRNA:   3'- aaGUCG-GCUCGGACCUCC-----UGGGCaaG- -5'
5502 5' -59.5 NC_001798.1 + 53874 0.78 0.176599
Target:  5'- cUCAGCgGgAGUCUGGAGGGCCCGc-- -3'
miRNA:   3'- aAGUCGgC-UCGGACCUCCUGGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.