miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5503 3' -50.6 NC_001798.1 + 30957 0.66 0.99716
Target:  5'- --gGCgGGCGggGGUCGggcGGGGGUCggGCg -3'
miRNA:   3'- ggaUG-UUGU--UCAGCaa-CCCCCAGa-CG- -5'
5503 3' -50.6 NC_001798.1 + 16050 0.66 0.996596
Target:  5'- --aGCGACGcgugguaGGUCGcUGGGGGcggcgggcgUCUGUg -3'
miRNA:   3'- ggaUGUUGU-------UCAGCaACCCCC---------AGACG- -5'
5503 3' -50.6 NC_001798.1 + 17955 0.66 0.996067
Target:  5'- cCUUACccguucGCAGguccggacGUCGggGGGGG-CUGCg -3'
miRNA:   3'- -GGAUGu-----UGUU--------CAGCaaCCCCCaGACG- -5'
5503 3' -50.6 NC_001798.1 + 12026 0.66 0.996067
Target:  5'- gCC-ACGGCGGGgCGgcGGGGGcaUGCg -3'
miRNA:   3'- -GGaUGUUGUUCaGCaaCCCCCagACG- -5'
5503 3' -50.6 NC_001798.1 + 36098 0.66 0.995404
Target:  5'- ----gGGCGGGUgGUgggGGGGGgcccggCUGCg -3'
miRNA:   3'- ggaugUUGUUCAgCAa--CCCCCa-----GACG- -5'
5503 3' -50.6 NC_001798.1 + 64619 0.66 0.995404
Target:  5'- uCCUuCAGCAAGagcgUGUUGGGGcgcagcGUCUcGCc -3'
miRNA:   3'- -GGAuGUUGUUCa---GCAACCCC------CAGA-CG- -5'
5503 3' -50.6 NC_001798.1 + 135444 0.66 0.994651
Target:  5'- gUCUGCGGCGgcaccgGGgcugCGUucUGGGGG-CUGUu -3'
miRNA:   3'- -GGAUGUUGU------UCa---GCA--ACCCCCaGACG- -5'
5503 3' -50.6 NC_001798.1 + 51604 0.66 0.993802
Target:  5'- uCCggAUAGCGcguucgggcuGUCGcgcgUGGGGGUCaUGCa -3'
miRNA:   3'- -GGa-UGUUGUu---------CAGCa---ACCCCCAG-ACG- -5'
5503 3' -50.6 NC_001798.1 + 105990 0.67 0.991781
Target:  5'- gCCUACGACcccuGGggaggGGGGGUC-GCu -3'
miRNA:   3'- -GGAUGUUGu---UCagcaaCCCCCAGaCG- -5'
5503 3' -50.6 NC_001798.1 + 121236 0.67 0.991781
Target:  5'- aUCUcCAGCGAGUgccuggcggCGgcGGGGGUCccGCu -3'
miRNA:   3'- -GGAuGUUGUUCA---------GCaaCCCCCAGa-CG- -5'
5503 3' -50.6 NC_001798.1 + 125669 0.67 0.98927
Target:  5'- --gGCGGCugAGGUCag-GGGGGUCgggGCg -3'
miRNA:   3'- ggaUGUUG--UUCAGcaaCCCCCAGa--CG- -5'
5503 3' -50.6 NC_001798.1 + 15435 0.67 0.98927
Target:  5'- uUUGgGGCcccgGAGUCGUggggcgGGGGGUC-GCg -3'
miRNA:   3'- gGAUgUUG----UUCAGCAa-----CCCCCAGaCG- -5'
5503 3' -50.6 NC_001798.1 + 74511 0.68 0.986197
Target:  5'- cCCUGCGggGCGAGaUCG--GGGGGcUCgggGCg -3'
miRNA:   3'- -GGAUGU--UGUUC-AGCaaCCCCC-AGa--CG- -5'
5503 3' -50.6 NC_001798.1 + 152190 0.68 0.985684
Target:  5'- gCCUGaGACccggGGGUCGcccucucaccgugccGGGGGUCUGCc -3'
miRNA:   3'- -GGAUgUUG----UUCAGCaa-------------CCCCCAGACG- -5'
5503 3' -50.6 NC_001798.1 + 12743 0.68 0.984428
Target:  5'- uCCUGgauCGACGGGaUGUgccaguuugGGGGGaUCUGCg -3'
miRNA:   3'- -GGAU---GUUGUUCaGCAa--------CCCCC-AGACG- -5'
5503 3' -50.6 NC_001798.1 + 30924 0.69 0.975592
Target:  5'- gCCgACggUGAGggCGgcGGGGGUCggGCg -3'
miRNA:   3'- -GGaUGuuGUUCa-GCaaCCCCCAGa-CG- -5'
5503 3' -50.6 NC_001798.1 + 133301 0.69 0.972902
Target:  5'- gCCUGCAGUggGacUCGauggccgGGGGGUCgggGCg -3'
miRNA:   3'- -GGAUGUUGuuC--AGCaa-----CCCCCAGa--CG- -5'
5503 3' -50.6 NC_001798.1 + 45253 0.71 0.938597
Target:  5'- uCCUGCAgauguACAuGUCGgUGGGGG-CcGCg -3'
miRNA:   3'- -GGAUGU-----UGUuCAGCaACCCCCaGaCG- -5'
5503 3' -50.6 NC_001798.1 + 86628 0.76 0.744917
Target:  5'- gCCUgcgGCAACGAGuUCGaggGGcGGGUCUGUa -3'
miRNA:   3'- -GGA---UGUUGUUC-AGCaa-CC-CCCAGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.