Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5503 | 3' | -50.6 | NC_001798.1 | + | 86628 | 0.76 | 0.744917 |
Target: 5'- gCCUgcgGCAACGAGuUCGaggGGcGGGUCUGUa -3' miRNA: 3'- -GGA---UGUUGUUC-AGCaa-CC-CCCAGACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 45253 | 0.71 | 0.938597 |
Target: 5'- uCCUGCAgauguACAuGUCGgUGGGGG-CcGCg -3' miRNA: 3'- -GGAUGU-----UGUuCAGCaACCCCCaGaCG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 133301 | 0.69 | 0.972902 |
Target: 5'- gCCUGCAGUggGacUCGauggccgGGGGGUCgggGCg -3' miRNA: 3'- -GGAUGUUGuuC--AGCaa-----CCCCCAGa--CG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 30924 | 0.69 | 0.975592 |
Target: 5'- gCCgACggUGAGggCGgcGGGGGUCggGCg -3' miRNA: 3'- -GGaUGuuGUUCa-GCaaCCCCCAGa-CG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 12743 | 0.68 | 0.984428 |
Target: 5'- uCCUGgauCGACGGGaUGUgccaguuugGGGGGaUCUGCg -3' miRNA: 3'- -GGAU---GUUGUUCaGCAa--------CCCCC-AGACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 152190 | 0.68 | 0.985684 |
Target: 5'- gCCUGaGACccggGGGUCGcccucucaccgugccGGGGGUCUGCc -3' miRNA: 3'- -GGAUgUUG----UUCAGCaa-------------CCCCCAGACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 74511 | 0.68 | 0.986197 |
Target: 5'- cCCUGCGggGCGAGaUCG--GGGGGcUCgggGCg -3' miRNA: 3'- -GGAUGU--UGUUC-AGCaaCCCCC-AGa--CG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 15435 | 0.67 | 0.98927 |
Target: 5'- uUUGgGGCcccgGAGUCGUggggcgGGGGGUC-GCg -3' miRNA: 3'- gGAUgUUG----UUCAGCAa-----CCCCCAGaCG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 125669 | 0.67 | 0.98927 |
Target: 5'- --gGCGGCugAGGUCag-GGGGGUCgggGCg -3' miRNA: 3'- ggaUGUUG--UUCAGcaaCCCCCAGa--CG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 105990 | 0.67 | 0.991781 |
Target: 5'- gCCUACGACcccuGGggaggGGGGGUC-GCu -3' miRNA: 3'- -GGAUGUUGu---UCagcaaCCCCCAGaCG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 121236 | 0.67 | 0.991781 |
Target: 5'- aUCUcCAGCGAGUgccuggcggCGgcGGGGGUCccGCu -3' miRNA: 3'- -GGAuGUUGUUCA---------GCaaCCCCCAGa-CG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 51604 | 0.66 | 0.993802 |
Target: 5'- uCCggAUAGCGcguucgggcuGUCGcgcgUGGGGGUCaUGCa -3' miRNA: 3'- -GGa-UGUUGUu---------CAGCa---ACCCCCAG-ACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 135444 | 0.66 | 0.994651 |
Target: 5'- gUCUGCGGCGgcaccgGGgcugCGUucUGGGGG-CUGUu -3' miRNA: 3'- -GGAUGUUGU------UCa---GCA--ACCCCCaGACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 64619 | 0.66 | 0.995404 |
Target: 5'- uCCUuCAGCAAGagcgUGUUGGGGcgcagcGUCUcGCc -3' miRNA: 3'- -GGAuGUUGUUCa---GCAACCCC------CAGA-CG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 36098 | 0.66 | 0.995404 |
Target: 5'- ----gGGCGGGUgGUgggGGGGGgcccggCUGCg -3' miRNA: 3'- ggaugUUGUUCAgCAa--CCCCCa-----GACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 12026 | 0.66 | 0.996067 |
Target: 5'- gCC-ACGGCGGGgCGgcGGGGGcaUGCg -3' miRNA: 3'- -GGaUGUUGUUCaGCaaCCCCCagACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 17955 | 0.66 | 0.996067 |
Target: 5'- cCUUACccguucGCAGguccggacGUCGggGGGGG-CUGCg -3' miRNA: 3'- -GGAUGu-----UGUU--------CAGCaaCCCCCaGACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 16050 | 0.66 | 0.996596 |
Target: 5'- --aGCGACGcgugguaGGUCGcUGGGGGcggcgggcgUCUGUg -3' miRNA: 3'- ggaUGUUGU-------UCAGCaACCCCC---------AGACG- -5' |
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5503 | 3' | -50.6 | NC_001798.1 | + | 30957 | 0.66 | 0.99716 |
Target: 5'- --gGCgGGCGggGGUCGggcGGGGGUCggGCg -3' miRNA: 3'- ggaUG-UUGU--UCAGCaa-CCCCCAGa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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