miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 66766 0.68 0.783237
Target:  5'- gGGGUGcGGCGG-CGugGGCcgCGGa- -3'
miRNA:   3'- -CCCGCaCUGCCaGCugUCGuaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 45175 0.68 0.783237
Target:  5'- aGGGCuccaccaucGACGGggccguugCGGC-GCAUCGGGAc -3'
miRNA:   3'- -CCCGca-------CUGCCa-------GCUGuCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 136135 0.68 0.774185
Target:  5'- aGGCGUGugGGgCGAgGGC---GGGAg -3'
miRNA:   3'- cCCGCACugCCaGCUgUCGuagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 100755 0.68 0.765012
Target:  5'- gGGGCGc-GCGGUCGGCAagGUAgucaUGGGAg -3'
miRNA:   3'- -CCCGCacUGCCAGCUGU--CGUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 138213 0.67 0.809587
Target:  5'- aGGGaggGUG-UGGUCGACGGCG--GGGGu -3'
miRNA:   3'- -CCCg--CACuGCCAGCUGUCGUagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 54387 0.67 0.818074
Target:  5'- gGGGCcgcgGcGCGGUCGGCGGgAgcugcCGGGAc -3'
miRNA:   3'- -CCCGca--C-UGCCAGCUGUCgUa----GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153077 0.67 0.842545
Target:  5'- cGGGCGgagcGGCGG--GGCGGCGcCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCagCUGUCGUaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 2441 0.67 0.842545
Target:  5'- cGGCGgcUGGCGG-CGcCAGCcgcccugcggGUCGGGGc -3'
miRNA:   3'- cCCGC--ACUGCCaGCuGUCG----------UAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 39856 0.67 0.834561
Target:  5'- cGGGCGaGGC-GUCGA-GGCuUCGGGGg -3'
miRNA:   3'- -CCCGCaCUGcCAGCUgUCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153773 0.67 0.827225
Target:  5'- gGGGCGcuGCGGcccgcgcuccuugcgCGGCGGCggCGGGGg -3'
miRNA:   3'- -CCCGCacUGCCa--------------GCUGUCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 111606 0.67 0.826401
Target:  5'- gGGGCGgccuccugGAgcccCGGgggCGGCAgacucGCGUCGGGGg -3'
miRNA:   3'- -CCCGCa-------CU----GCCa--GCUGU-----CGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 83577 0.67 0.826401
Target:  5'- gGGGCgGUGaaacuGCGG--GGCGGcCAUCGGGAc -3'
miRNA:   3'- -CCCG-CAC-----UGCCagCUGUC-GUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 8885 0.67 0.826401
Target:  5'- aGGGCGcUGGCGGagGGCggaGGCGaaggUGGGGu -3'
miRNA:   3'- -CCCGC-ACUGCCagCUG---UCGUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 11316 0.67 0.825576
Target:  5'- aGGGaagGcAUGGUCGuggacgacgacgaACGGCGUCGGGGu -3'
miRNA:   3'- -CCCgcaC-UGCCAGC-------------UGUCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 29934 0.67 0.82309
Target:  5'- gGGGCGggacgcuUGACGGggcCGACccccggcccgcuuaAGCGgUCGGGGg -3'
miRNA:   3'- -CCCGC-------ACUGCCa--GCUG--------------UCGU-AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 41466 0.67 0.821425
Target:  5'- cGGGgGgGGCGGUCGgcgggcccagaaacaACAGCGUCuGGu -3'
miRNA:   3'- -CCCgCaCUGCCAGC---------------UGUCGUAGcCCu -5'
5504 3' -57.6 NC_001798.1 + 154291 0.68 0.759454
Target:  5'- cGGGcCGUGuuGCGGgcccucuuaaggggCGGCGGCAggaCGGGGa -3'
miRNA:   3'- -CCC-GCAC--UGCCa-------------GCUGUCGUa--GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.