miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 3313 0.66 0.857962
Target:  5'- cGGCaacggGGCGG-CGGCGGCggCGGGc -3'
miRNA:   3'- cCCGca---CUGCCaGCUGUCGuaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 27391 0.66 0.865383
Target:  5'- aGGGCGa-GCGGUggugCGACuGGCGucuUCGGGGg -3'
miRNA:   3'- -CCCGCacUGCCA----GCUG-UCGU---AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 21731 0.66 0.865383
Target:  5'- cGGUGUGccccUGGUgCGGCGGCGacCGGGAc -3'
miRNA:   3'- cCCGCACu---GCCA-GCUGUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 138505 0.66 0.865383
Target:  5'- aGGGCGUGGCacgCGACGaucUCGGGGc -3'
miRNA:   3'- -CCCGCACUGccaGCUGUcguAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26993 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26963 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26844 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26874 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26814 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 144575 0.66 0.865383
Target:  5'- aGGGCGagGACGGgCGGCuggguGGCGagGGGc -3'
miRNA:   3'- -CCCGCa-CUGCCaGCUG-----UCGUagCCCu -5'
5504 3' -57.6 NC_001798.1 + 139363 0.66 0.865383
Target:  5'- cGGCGUccGGCGGg-GAgGGCucgCGGGAc -3'
miRNA:   3'- cCCGCA--CUGCCagCUgUCGua-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 45928 0.66 0.872604
Target:  5'- gGGGgGUGGCGGUC----GCGUCcGGAa -3'
miRNA:   3'- -CCCgCACUGCCAGcuguCGUAGcCCU- -5'
5504 3' -57.6 NC_001798.1 + 28787 0.66 0.886427
Target:  5'- aGGCG--GCGG-CGGCGGCGcgCGGGu -3'
miRNA:   3'- cCCGCacUGCCaGCUGUCGUa-GCCCu -5'
5504 3' -57.6 NC_001798.1 + 42198 0.66 0.884407
Target:  5'- gGGGCGUGaaaguggaagcgccGCgGGUCGGCGuGCG-CGGcGAc -3'
miRNA:   3'- -CCCGCAC--------------UG-CCAGCUGU-CGUaGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 114869 0.66 0.87962
Target:  5'- cGGGCG-GcCGGUCGACGGgGUgcUGGu- -3'
miRNA:   3'- -CCCGCaCuGCCAGCUGUCgUA--GCCcu -5'
5504 3' -57.6 NC_001798.1 + 102384 0.66 0.87962
Target:  5'- -cGCcUGGCGGUCGGCGGCGaUGGc- -3'
miRNA:   3'- ccCGcACUGCCAGCUGUCGUaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 2565 0.66 0.87962
Target:  5'- gGGGCGgccgcggGGCGGggggCGuccgcGCGGCucuucuUCGGGGg -3'
miRNA:   3'- -CCCGCa------CUGCCa---GC-----UGUCGu-----AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 73650 0.66 0.878928
Target:  5'- uGGGCGgGGgGGUucgggCGGCGGaaacaacaguacuCAUCGGGAc -3'
miRNA:   3'- -CCCGCaCUgCCA-----GCUGUC-------------GUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 151789 0.66 0.877537
Target:  5'- aGGCGUG-CGGggCGGCgggcugcuugacaaAGCAaCGGGGg -3'
miRNA:   3'- cCCGCACuGCCa-GCUG--------------UCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 127275 0.66 0.872604
Target:  5'- cGGGC-UGGCGGUCGAUcucuacGCccUGGGGc -3'
miRNA:   3'- -CCCGcACUGCCAGCUGu-----CGuaGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.