miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 105611 0.78 0.278069
Target:  5'- aGGGCGgcgGGCGGgcgaCGACGGCGcucCGGGAa -3'
miRNA:   3'- -CCCGCa--CUGCCa---GCUGUCGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 2507 0.78 0.278069
Target:  5'- gGGGCGcGGCGGccgcggCGGCGGCGUCGGcGGg -3'
miRNA:   3'- -CCCGCaCUGCCa-----GCUGUCGUAGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 36419 0.77 0.297736
Target:  5'- cGGGCGgGGCGGUgGgGCGGgGUCGGGGu -3'
miRNA:   3'- -CCCGCaCUGCCAgC-UGUCgUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 70310 0.77 0.325611
Target:  5'- cGGGCGcGGCGGUCGGCccGGCGgaggcgCGGGc -3'
miRNA:   3'- -CCCGCaCUGCCAGCUG--UCGUa-----GCCCu -5'
5504 3' -57.6 NC_001798.1 + 85830 0.76 0.355379
Target:  5'- gGGGCGggGGCGGgCGGgGGC-UCGGGAa -3'
miRNA:   3'- -CCCGCa-CUGCCaGCUgUCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 122819 0.75 0.411922
Target:  5'- uGGGCGgccagGGCGGUCGGgGGCggCGGcGGc -3'
miRNA:   3'- -CCCGCa----CUGCCAGCUgUCGuaGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 36506 0.74 0.42907
Target:  5'- cGGGCGgccgGGCGGgggcgcgCGGCGGCcgggCGGGGg -3'
miRNA:   3'- -CCCGCa---CUGCCa------GCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 145806 0.74 0.464587
Target:  5'- cGGGCGgcagaaacGCGGgcgCGGCGGCGgUCGGGGu -3'
miRNA:   3'- -CCCGCac------UGCCa--GCUGUCGU-AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 59 0.73 0.492203
Target:  5'- gGGGCGcgaaGGCGGgCGGCGGCggCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCaGCUGUCGuaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 154397 0.73 0.492203
Target:  5'- gGGGCGcgaaGGCGGgCGGCGGCggCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCaGCUGUCGuaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 134342 0.73 0.520552
Target:  5'- uGGuCGUGAgGGUCGAaagGGCGUCGuGGGg -3'
miRNA:   3'- cCC-GCACUgCCAGCUg--UCGUAGC-CCU- -5'
5504 3' -57.6 NC_001798.1 + 96038 0.72 0.530145
Target:  5'- cGGGCG-GGCGGgCGACGGgCAUaaagaGGGGa -3'
miRNA:   3'- -CCCGCaCUGCCaGCUGUC-GUAg----CCCU- -5'
5504 3' -57.6 NC_001798.1 + 95665 0.72 0.539801
Target:  5'- cGGCGUcguucGGCGGUuuggCGGCGGCggCGGGGg -3'
miRNA:   3'- cCCGCA-----CUGCCA----GCUGUCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153610 0.72 0.559286
Target:  5'- gGGGCGUcaGGgGGUCGGaggGGCGUCaGGGGg -3'
miRNA:   3'- -CCCGCA--CUgCCAGCUg--UCGUAG-CCCU- -5'
5504 3' -57.6 NC_001798.1 + 34613 0.72 0.559286
Target:  5'- cGGGCaaagGGCGG-CGGCGGCGggGGGGg -3'
miRNA:   3'- -CCCGca--CUGCCaGCUGUCGUagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153572 0.72 0.559286
Target:  5'- gGGGCGUcaGGgGGUCGGaggGGCGUCaGGGGg -3'
miRNA:   3'- -CCCGCA--CUgCCAGCUg--UCGUAG-CCCU- -5'
5504 3' -57.6 NC_001798.1 + 9702 0.72 0.559286
Target:  5'- cGGGCGgGugGGcUCGACGGgcUCGGGc -3'
miRNA:   3'- -CCCGCaCugCC-AGCUGUCguAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 16613 0.72 0.559286
Target:  5'- gGGGCucGUGACGGaCGAC-GCGcCGGGGc -3'
miRNA:   3'- -CCCG--CACUGCCaGCUGuCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153534 0.72 0.559286
Target:  5'- gGGGCGUcaGGgGGUCGGaggGGCGUCaGGGGg -3'
miRNA:   3'- -CCCGCA--CUgCCAGCUg--UCGUAG-CCCU- -5'
5504 3' -57.6 NC_001798.1 + 27221 0.72 0.559286
Target:  5'- gGGGCGgggcGCGGgggaGGCGGCcgCGGGGg -3'
miRNA:   3'- -CCCGCac--UGCCag--CUGUCGuaGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.