miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 26993 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 76964 0.67 0.850348
Target:  5'- cGGGCGgaccUGugGGggcugcuggGGCAGUAcCGGGAg -3'
miRNA:   3'- -CCCGC----ACugCCag-------CUGUCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150847 0.67 0.850348
Target:  5'- gGGGCGc--CGGUCGggucGCGGCGggcUGGGAg -3'
miRNA:   3'- -CCCGCacuGCCAGC----UGUCGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150106 0.67 0.850348
Target:  5'- gGGGCGgcggaggaagaGGCGGagGACgaGGCcgCGGGGc -3'
miRNA:   3'- -CCCGCa----------CUGCCagCUG--UCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150437 0.67 0.850348
Target:  5'- gGGGCGgacuccgGACGcGcggggCGACGGCcgcgCGGGGg -3'
miRNA:   3'- -CCCGCa------CUGC-Ca----GCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153077 0.67 0.842545
Target:  5'- cGGGCGgagcGGCGG--GGCGGCGcCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCagCUGUCGUaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 2441 0.67 0.842545
Target:  5'- cGGCGgcUGGCGG-CGcCAGCcgcccugcggGUCGGGGc -3'
miRNA:   3'- cCCGC--ACUGCCaGCuGUCG----------UAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 39856 0.67 0.834561
Target:  5'- cGGGCGaGGC-GUCGA-GGCuUCGGGGg -3'
miRNA:   3'- -CCCGCaCUGcCAGCUgUCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153773 0.67 0.827225
Target:  5'- gGGGCGcuGCGGcccgcgcuccuugcgCGGCGGCggCGGGGg -3'
miRNA:   3'- -CCCGCacUGCCa--------------GCUGUCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 8885 0.67 0.826401
Target:  5'- aGGGCGcUGGCGGagGGCggaGGCGaaggUGGGGu -3'
miRNA:   3'- -CCCGC-ACUGCCagCUG---UCGUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 83577 0.67 0.826401
Target:  5'- gGGGCgGUGaaacuGCGG--GGCGGcCAUCGGGAc -3'
miRNA:   3'- -CCCG-CAC-----UGCCagCUGUC-GUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 111606 0.67 0.826401
Target:  5'- gGGGCGgccuccugGAgcccCGGgggCGGCAgacucGCGUCGGGGg -3'
miRNA:   3'- -CCCGCa-------CU----GCCa--GCUGU-----CGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 11316 0.67 0.825576
Target:  5'- aGGGaagGcAUGGUCGuggacgacgacgaACGGCGUCGGGGu -3'
miRNA:   3'- -CCCgcaC-UGCCAGC-------------UGUCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 29934 0.67 0.82309
Target:  5'- gGGGCGggacgcuUGACGGggcCGACccccggcccgcuuaAGCGgUCGGGGg -3'
miRNA:   3'- -CCCGC-------ACUGCCa--GCUG--------------UCGU-AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 41466 0.67 0.821425
Target:  5'- cGGGgGgGGCGGUCGgcgggcccagaaacaACAGCGUCuGGu -3'
miRNA:   3'- -CCCgCaCUGCCAGC---------------UGUCGUAGcCCu -5'
5504 3' -57.6 NC_001798.1 + 54387 0.67 0.818074
Target:  5'- gGGGCcgcgGcGCGGUCGGCGGgAgcugcCGGGAc -3'
miRNA:   3'- -CCCGca--C-UGCCAGCUGUCgUa----GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 48536 0.67 0.809587
Target:  5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3'
miRNA:   3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 48572 0.67 0.809587
Target:  5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3'
miRNA:   3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 48608 0.67 0.809587
Target:  5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3'
miRNA:   3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 20342 0.67 0.809587
Target:  5'- uGGCGcaGGCGGUUggcgcugccgGGCGGguUCGGGGc -3'
miRNA:   3'- cCCGCa-CUGCCAG----------CUGUCguAGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.