miRNA display CGI


Results 121 - 140 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 82150 0.68 0.827164
Target:  5'- cUCCCCGGGAcCCAGCcgaccaCGCgGcCGCg -3'
miRNA:   3'- uAGGGGCUUUuGGUCGc-----GUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 24286 0.68 0.827164
Target:  5'- -gCCCCugcuggcgcgcGAGAACgCGGCGCugACCGgggCGCg -3'
miRNA:   3'- uaGGGG-----------CUUUUG-GUCGCG--UGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 115495 0.68 0.824628
Target:  5'- -aCCCCGucGAGGCCgcgaauccguacggGGCGUA-CGUCGCg -3'
miRNA:   3'- uaGGGGC--UUUUGG--------------UCGCGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 70222 0.68 0.81865
Target:  5'- -cCCUCGAgcGAGCCGGCGgGCag-CGCg -3'
miRNA:   3'- uaGGGGCU--UUUGGUCGCgUGgcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 66646 0.68 0.81865
Target:  5'- cGUCCCCcaGAAACC-GCGCcACCGccucCGCg -3'
miRNA:   3'- -UAGGGGc-UUUUGGuCGCG-UGGCa---GCG- -5'
5504 5' -56.2 NC_001798.1 + 48366 0.68 0.81865
Target:  5'- --gCCCGggGccGCCccgcggGGCGUGCCGcCGCg -3'
miRNA:   3'- uagGGGCuuU--UGG------UCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 4975 0.68 0.81865
Target:  5'- -gCCCCGcgGcCCuGCGCGUCGUCGUc -3'
miRNA:   3'- uaGGGGCuuUuGGuCGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 130037 0.68 0.809966
Target:  5'- -cCCCCGcgGACCuuGGCGCAUaccccuccacggUGUCGUa -3'
miRNA:   3'- uaGGGGCuuUUGG--UCGCGUG------------GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 116438 0.69 0.773711
Target:  5'- -gCCgCCGAcGACCGGcCGCACCGgccgGCc -3'
miRNA:   3'- uaGG-GGCUuUUGGUC-GCGUGGCag--CG- -5'
5504 5' -56.2 NC_001798.1 + 66406 0.69 0.773711
Target:  5'- --aCCCGuuAACCAGC-CGC-GUCGCa -3'
miRNA:   3'- uagGGGCuuUUGGUCGcGUGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 43004 0.69 0.773711
Target:  5'- -cCCCCGAcgGCCAGgcCGC-CCGgggggagCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUC--GCGuGGCa------GCG- -5'
5504 5' -56.2 NC_001798.1 + 144099 0.69 0.773711
Target:  5'- cUgCCCGAugauAACCAcGCGCA-CGUCGUc -3'
miRNA:   3'- uAgGGGCUu---UUGGU-CGCGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 111225 0.69 0.773711
Target:  5'- -gUCCCGGccGCCAGCGC---GUCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGCGuggCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 134451 0.69 0.773711
Target:  5'- cGUCgCCGAGcaccCCGGCGCGCgGUUGg -3'
miRNA:   3'- -UAGgGGCUUuu--GGUCGCGUGgCAGCg -5'
5504 5' -56.2 NC_001798.1 + 149233 0.69 0.773711
Target:  5'- cUCCCCGu-GGCCcgcgggGGCGuCGCCGgccggCGCg -3'
miRNA:   3'- uAGGGGCuuUUGG------UCGC-GUGGCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 139316 0.69 0.781141
Target:  5'- -gCCCCGcguccgcaucGCCGGCGC-CCG-CGCg -3'
miRNA:   3'- uaGGGGCuuu-------UGGUCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 7342 0.69 0.782986
Target:  5'- uUCCCCGAGAGcCCAGgGaACCG-CGa -3'
miRNA:   3'- uAGGGGCUUUU-GGUCgCgUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 53223 0.69 0.782986
Target:  5'- -aCCCCGGAGGggcuccUCAGCGCgGCCGUgGg -3'
miRNA:   3'- uaGGGGCUUUU------GGUCGCG-UGGCAgCg -5'
5504 5' -56.2 NC_001798.1 + 84601 0.69 0.782986
Target:  5'- gGUCCCgGu--GCCGGUGCcccGCCGaagCGCg -3'
miRNA:   3'- -UAGGGgCuuuUGGUCGCG---UGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 75205 0.69 0.773711
Target:  5'- -cCCCCGGAGccccCCGGCGCcgACCuggCGCa -3'
miRNA:   3'- uaGGGGCUUUu---GGUCGCG--UGGca-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.