miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 3663 0.7 0.729562
Target:  5'- cGUCCCCGGGcGCCAcGCGCGgguucuggagccaccCCaUCGCc -3'
miRNA:   3'- -UAGGGGCUUuUGGU-CGCGU---------------GGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 25811 0.7 0.725626
Target:  5'- aGUUCCUGggGcugcugGCCGGCGCcugcgACCGcCGCc -3'
miRNA:   3'- -UAGGGGCuuU------UGGUCGCG-----UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 9038 0.7 0.685657
Target:  5'- -cCCCCGc-AGCCAGCGCACgG-CGa -3'
miRNA:   3'- uaGGGGCuuUUGGUCGCGUGgCaGCg -5'
5504 5' -56.2 NC_001798.1 + 57729 0.7 0.685657
Target:  5'- -cCCCCGcgaAGGACCggugGGCGCGCCcggCGCa -3'
miRNA:   3'- uaGGGGC---UUUUGG----UCGCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 28947 0.7 0.675532
Target:  5'- uAUCCgCGAGGGcCCGGCGCcgccCCGcCGCu -3'
miRNA:   3'- -UAGGgGCUUUU-GGUCGCGu---GGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 84878 0.7 0.682624
Target:  5'- uGUCCUCGA--ACCAGacggccgcguccccCGCGCCGucUCGCg -3'
miRNA:   3'- -UAGGGGCUuuUGGUC--------------GCGUGGC--AGCG- -5'
5504 5' -56.2 NC_001798.1 + 124984 0.7 0.695738
Target:  5'- gGUCCCCGAGcAGCaCGGCG-GCCagaaaguagGUCGCg -3'
miRNA:   3'- -UAGGGGCUU-UUG-GUCGCgUGG---------CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 86071 0.7 0.714738
Target:  5'- -cCCCCGccgucugggagucGGGGCCccggcuGCGCGCCGcCGCg -3'
miRNA:   3'- uaGGGGC-------------UUUUGGu-----CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 22397 0.7 0.725626
Target:  5'- -aCCCCGGcGAGCCGGgGCGCggcggCGUCGa -3'
miRNA:   3'- uaGGGGCU-UUUGGUCgCGUG-----GCAGCg -5'
5504 5' -56.2 NC_001798.1 + 28040 0.7 0.675532
Target:  5'- gGUCCCugcguacgacuCGGGAACCgcggucgagAGCGCGCCGgcCGCg -3'
miRNA:   3'- -UAGGG-----------GCUUUUGG---------UCGCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 22852 0.7 0.695738
Target:  5'- -aCCCCGAAcccgGACCGuCGCcCCGcCGCg -3'
miRNA:   3'- uaGGGGCUU----UUGGUcGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 1356 0.7 0.675532
Target:  5'- cUCCgCCGG--GCCGccGCGCACggCGUCGCg -3'
miRNA:   3'- uAGG-GGCUuuUGGU--CGCGUG--GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 82001 0.7 0.685657
Target:  5'- cGUCCCCGggGgcgaccGCCGcCGCGgCCGcCGCc -3'
miRNA:   3'- -UAGGGGCuuU------UGGUcGCGU-GGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 122732 0.7 0.695738
Target:  5'- cUCCUgGAGAACCugauGCGCGCC-UCGa -3'
miRNA:   3'- uAGGGgCUUUUGGu---CGCGUGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 7342 0.69 0.782986
Target:  5'- uUCCCCGAGAGcCCAGgGaACCG-CGa -3'
miRNA:   3'- uAGGGGCUUUU-GGUCgCgUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 53223 0.69 0.782986
Target:  5'- -aCCCCGGAGGggcuccUCAGCGCgGCCGUgGg -3'
miRNA:   3'- uaGGGGCUUUU------GGUCGCG-UGGCAgCg -5'
5504 5' -56.2 NC_001798.1 + 116438 0.69 0.773711
Target:  5'- -gCCgCCGAcGACCGGcCGCACCGgccgGCc -3'
miRNA:   3'- uaGG-GGCUuUUGGUC-GCGUGGCag--CG- -5'
5504 5' -56.2 NC_001798.1 + 43004 0.69 0.773711
Target:  5'- -cCCCCGAcgGCCAGgcCGC-CCGgggggagCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUC--GCGuGGCa------GCG- -5'
5504 5' -56.2 NC_001798.1 + 149233 0.69 0.773711
Target:  5'- cUCCCCGu-GGCCcgcgggGGCGuCGCCGgccggCGCg -3'
miRNA:   3'- uAGGGGCuuUUGG------UCGC-GUGGCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 139316 0.69 0.781141
Target:  5'- -gCCCCGcguccgcaucGCCGGCGC-CCG-CGCg -3'
miRNA:   3'- uaGGGGCuuu-------UGGUCGCGuGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.