miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 66406 0.69 0.773711
Target:  5'- --aCCCGuuAACCAGC-CGC-GUCGCa -3'
miRNA:   3'- uagGGGCuuUUGGUCGcGUGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 42682 0.69 0.73544
Target:  5'- cGUCgCCGGGAccACCGGCGuCGgggaaccaguccCCGUCGCc -3'
miRNA:   3'- -UAGgGGCUUU--UGGUCGC-GU------------GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 123405 0.69 0.745165
Target:  5'- -cCCCCGGGAGCC-GCGgccccgccggguCACCGgggCGCc -3'
miRNA:   3'- uaGGGGCUUUUGGuCGC------------GUGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 116438 0.69 0.773711
Target:  5'- -gCCgCCGAcGACCGGcCGCACCGgccgGCc -3'
miRNA:   3'- uaGG-GGCUuUUGGUC-GCGUGGCag--CG- -5'
5504 5' -56.2 NC_001798.1 + 1526 0.69 0.745165
Target:  5'- cGUCCagcgCCGGGAGCaCGGCGCGgCGguacUCGCg -3'
miRNA:   3'- -UAGG----GGCUUUUG-GUCGCGUgGC----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 134451 0.69 0.773711
Target:  5'- cGUCgCCGAGcaccCCGGCGCGCgGUUGg -3'
miRNA:   3'- -UAGgGGCUUuu--GGUCGCGUGgCAGCg -5'
5504 5' -56.2 NC_001798.1 + 28372 0.69 0.73544
Target:  5'- cGUCCCCGcccg-CGGaCGCGCCG-CGCg -3'
miRNA:   3'- -UAGGGGCuuuugGUC-GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 147007 0.69 0.782986
Target:  5'- -gCCUCGggGACCcccgGGCGgGCCGggGCu -3'
miRNA:   3'- uaGGGGCuuUUGG----UCGCgUGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 56261 0.69 0.773711
Target:  5'- -gCCCCGGAGuuACCgcagccgacgauAGCGCACCGaggaggCGUg -3'
miRNA:   3'- uaGGGGCUUU--UGG------------UCGCGUGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 90678 0.69 0.73544
Target:  5'- -cCCCCGgcGACUcGCGCaggGCCGcCGCc -3'
miRNA:   3'- uaGGGGCuuUUGGuCGCG---UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 79468 0.69 0.739342
Target:  5'- -cCCCCGAGGGCCacgaggucgacccgcAGCuGCugCGcCGCc -3'
miRNA:   3'- uaGGGGCUUUUGG---------------UCG-CGugGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 31221 0.69 0.745165
Target:  5'- -gCCCCGcGGAGCagcagcagcggCGGCGCcCCGUUGCg -3'
miRNA:   3'- uaGGGGC-UUUUG-----------GUCGCGuGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 110265 0.69 0.745165
Target:  5'- ---aCCGAAAACCGGCGCgACC-UCGg -3'
miRNA:   3'- uaggGGCUUUUGGUCGCG-UGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 153431 0.69 0.754791
Target:  5'- -cCCCCGucGGGCCAgGCGCgcgGCCGUCu- -3'
miRNA:   3'- uaGGGGCu-UUUGGU-CGCG---UGGCAGcg -5'
5504 5' -56.2 NC_001798.1 + 52038 0.69 0.764309
Target:  5'- --gCCCGggGugCgcgcgcuccuggGGCGCgACUGUCGCg -3'
miRNA:   3'- uagGGGCuuUugG------------UCGCG-UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 104595 0.69 0.764309
Target:  5'- cGUCgCCCGggGccGCCGGUaGCAccCCGUgGCg -3'
miRNA:   3'- -UAG-GGGCuuU--UGGUCG-CGU--GGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 75205 0.69 0.773711
Target:  5'- -cCCCCGGAGccccCCGGCGCcgACCuggCGCa -3'
miRNA:   3'- uaGGGGCUUUu---GGUCGCG--UGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 144099 0.69 0.773711
Target:  5'- cUgCCCGAugauAACCAcGCGCA-CGUCGUc -3'
miRNA:   3'- uAgGGGCUu---UUGGU-CGCGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 43004 0.69 0.773711
Target:  5'- -cCCCCGAcgGCCAGgcCGC-CCGgggggagCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUC--GCGuGGCa------GCG- -5'
5504 5' -56.2 NC_001798.1 + 139316 0.69 0.781141
Target:  5'- -gCCCCGcguccgcaucGCCGGCGC-CCG-CGCg -3'
miRNA:   3'- uaGGGGCuuu-------UGGUCGCGuGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.