miRNA display CGI


Results 101 - 120 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 28372 0.69 0.73544
Target:  5'- cGUCCCCGcccg-CGGaCGCGCCG-CGCg -3'
miRNA:   3'- -UAGGGGCuuuugGUC-GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 31221 0.69 0.745165
Target:  5'- -gCCCCGcGGAGCagcagcagcggCGGCGCcCCGUUGCg -3'
miRNA:   3'- uaGGGGC-UUUUG-----------GUCGCGuGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 74394 0.69 0.745165
Target:  5'- --gCCCGggGGCCguGGCGCcggcggaccugACCGcCGCg -3'
miRNA:   3'- uagGGGCuuUUGG--UCGCG-----------UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 84601 0.69 0.782986
Target:  5'- gGUCCCgGu--GCCGGUGCcccGCCGaagCGCg -3'
miRNA:   3'- -UAGGGgCuuuUGGUCGCG---UGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 53223 0.69 0.782986
Target:  5'- -aCCCCGGAGGggcuccUCAGCGCgGCCGUgGg -3'
miRNA:   3'- uaGGGGCUUUU------GGUCGCG-UGGCAgCg -5'
5504 5' -56.2 NC_001798.1 + 134451 0.69 0.773711
Target:  5'- cGUCgCCGAGcaccCCGGCGCGCgGUUGg -3'
miRNA:   3'- -UAGgGGCUUuu--GGUCGCGUGgCAGCg -5'
5504 5' -56.2 NC_001798.1 + 95023 0.69 0.73544
Target:  5'- --gCCUGGAGGCCGGgGC-CCG-CGCg -3'
miRNA:   3'- uagGGGCUUUUGGUCgCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 38722 0.69 0.73544
Target:  5'- -cCCCCGGGAugUaaaAGUGCAUCGucUCGCc -3'
miRNA:   3'- uaGGGGCUUUugG---UCGCGUGGC--AGCG- -5'
5504 5' -56.2 NC_001798.1 + 9960 0.69 0.73544
Target:  5'- aGUCCUgGAAcAGCCGGCGUACUG-CGg -3'
miRNA:   3'- -UAGGGgCUU-UUGGUCGCGUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 25423 0.68 0.801122
Target:  5'- -gCCUCGcuGGCCGcGCGCugCGcCGCc -3'
miRNA:   3'- uaGGGGCuuUUGGU-CGCGugGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 52468 0.68 0.801122
Target:  5'- -aCCCUGAAAuacgcccugGCCugcggggacGCGCGCCGgCGCa -3'
miRNA:   3'- uaGGGGCUUU---------UGGu--------CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 4114 0.68 0.809089
Target:  5'- -gCCCUGGGcgggcucGGCCGGgGCGCCGcccccggggcccUCGCg -3'
miRNA:   3'- uaGGGGCUU-------UUGGUCgCGUGGC------------AGCG- -5'
5504 5' -56.2 NC_001798.1 + 110400 0.68 0.809966
Target:  5'- -aCCCCGAAcguguuuuCCAGCGacguGCCGUcCGUg -3'
miRNA:   3'- uaGGGGCUUuu------GGUCGCg---UGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 121921 0.68 0.809966
Target:  5'- gAUCCUCGcgcugguCCAGCGgGCCGU-GCa -3'
miRNA:   3'- -UAGGGGCuuuu---GGUCGCgUGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 3285 0.68 0.809966
Target:  5'- --gCUCGucGGCCGGCGaCGCCGcCGCc -3'
miRNA:   3'- uagGGGCuuUUGGUCGC-GUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 56892 0.68 0.809966
Target:  5'- cGUCCUCGA--ACCAGacgaacucCGCGCgGUUGCc -3'
miRNA:   3'- -UAGGGGCUuuUGGUC--------GCGUGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 92283 0.68 0.809966
Target:  5'- uGUCCggCCGAAGGCCuGgaGCuGCUGUCGCu -3'
miRNA:   3'- -UAGG--GGCUUUUGGuCg-CG-UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 130037 0.68 0.809966
Target:  5'- -cCCCCGcgGACCuuGGCGCAUaccccuccacggUGUCGUa -3'
miRNA:   3'- uaGGGGCuuUUGG--UCGCGUG------------GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4975 0.68 0.81865
Target:  5'- -gCCCCGcgGcCCuGCGCGUCGUCGUc -3'
miRNA:   3'- uaGGGGCuuUuGGuCGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 48366 0.68 0.81865
Target:  5'- --gCCCGggGccGCCccgcggGGCGUGCCGcCGCg -3'
miRNA:   3'- uagGGGCuuU--UGG------UCGCGUGGCaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.