Results 81 - 100 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 38722 | 0.69 | 0.73544 |
Target: 5'- -cCCCCGGGAugUaaaAGUGCAUCGucUCGCc -3' miRNA: 3'- uaGGGGCUUUugG---UCGCGUGGC--AGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 95023 | 0.69 | 0.73544 |
Target: 5'- --gCCUGGAGGCCGGgGC-CCG-CGCg -3' miRNA: 3'- uagGGGCUUUUGGUCgCGuGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 42682 | 0.69 | 0.73544 |
Target: 5'- cGUCgCCGGGAccACCGGCGuCGgggaaccaguccCCGUCGCc -3' miRNA: 3'- -UAGgGGCUUU--UGGUCGC-GU------------GGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 79468 | 0.69 | 0.739342 |
Target: 5'- -cCCCCGAGGGCCacgaggucgacccgcAGCuGCugCGcCGCc -3' miRNA: 3'- uaGGGGCUUUUGG---------------UCG-CGugGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 1526 | 0.69 | 0.745165 |
Target: 5'- cGUCCagcgCCGGGAGCaCGGCGCGgCGguacUCGCg -3' miRNA: 3'- -UAGG----GGCUUUUG-GUCGCGUgGC----AGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 31221 | 0.69 | 0.745165 |
Target: 5'- -gCCCCGcGGAGCagcagcagcggCGGCGCcCCGUUGCg -3' miRNA: 3'- uaGGGGC-UUUUG-----------GUCGCGuGGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 110265 | 0.69 | 0.745165 |
Target: 5'- ---aCCGAAAACCGGCGCgACC-UCGg -3' miRNA: 3'- uaggGGCUUUUGGUCGCG-UGGcAGCg -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 123405 | 0.69 | 0.745165 |
Target: 5'- -cCCCCGGGAGCC-GCGgccccgccggguCACCGgggCGCc -3' miRNA: 3'- uaGGGGCUUUUGGuCGC------------GUGGCa--GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 74394 | 0.69 | 0.745165 |
Target: 5'- --gCCCGggGGCCguGGCGCcggcggaccugACCGcCGCg -3' miRNA: 3'- uagGGGCuuUUGG--UCGCG-----------UGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 153431 | 0.69 | 0.754791 |
Target: 5'- -cCCCCGucGGGCCAgGCGCgcgGCCGUCu- -3' miRNA: 3'- uaGGGGCu-UUUGGU-CGCG---UGGCAGcg -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 27925 | 0.69 | 0.758612 |
Target: 5'- gGUCCCCGccgccggggucCCGGCGCcgGCCG-CGCc -3' miRNA: 3'- -UAGGGGCuuuu-------GGUCGCG--UGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 104595 | 0.69 | 0.764309 |
Target: 5'- cGUCgCCCGggGccGCCGGUaGCAccCCGUgGCg -3' miRNA: 3'- -UAG-GGGCuuU--UGGUCG-CGU--GGCAgCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 52038 | 0.69 | 0.764309 |
Target: 5'- --gCCCGggGugCgcgcgcuccuggGGCGCgACUGUCGCg -3' miRNA: 3'- uagGGGCuuUugG------------UCGCG-UGGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 116438 | 0.69 | 0.773711 |
Target: 5'- -gCCgCCGAcGACCGGcCGCACCGgccgGCc -3' miRNA: 3'- uaGG-GGCUuUUGGUC-GCGUGGCag--CG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 66406 | 0.69 | 0.773711 |
Target: 5'- --aCCCGuuAACCAGC-CGC-GUCGCa -3' miRNA: 3'- uagGGGCuuUUGGUCGcGUGgCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 43004 | 0.69 | 0.773711 |
Target: 5'- -cCCCCGAcgGCCAGgcCGC-CCGgggggagCGCg -3' miRNA: 3'- uaGGGGCUuuUGGUC--GCGuGGCa------GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 144099 | 0.69 | 0.773711 |
Target: 5'- cUgCCCGAugauAACCAcGCGCA-CGUCGUc -3' miRNA: 3'- uAgGGGCUu---UUGGU-CGCGUgGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 111225 | 0.69 | 0.773711 |
Target: 5'- -gUCCCGGccGCCAGCGC---GUCGCg -3' miRNA: 3'- uaGGGGCUuuUGGUCGCGuggCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 26155 | 0.69 | 0.773711 |
Target: 5'- uGUCCCCGcgcgaguACCGcCGCGCCGU-GCu -3' miRNA: 3'- -UAGGGGCuuu----UGGUcGCGUGGCAgCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 5939 | 0.69 | 0.773711 |
Target: 5'- uUCCUCGcgcacauaaAGGGCCGGCGUcCCgGUCGCc -3' miRNA: 3'- uAGGGGC---------UUUUGGUCGCGuGG-CAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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