miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 116438 0.69 0.773711
Target:  5'- -gCCgCCGAcGACCGGcCGCACCGgccgGCc -3'
miRNA:   3'- uaGG-GGCUuUUGGUC-GCGUGGCag--CG- -5'
5504 5' -56.2 NC_001798.1 + 56261 0.69 0.773711
Target:  5'- -gCCCCGGAGuuACCgcagccgacgauAGCGCACCGaggaggCGUg -3'
miRNA:   3'- uaGGGGCUUU--UGG------------UCGCGUGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 26155 0.69 0.773711
Target:  5'- uGUCCCCGcgcgaguACCGcCGCGCCGU-GCu -3'
miRNA:   3'- -UAGGGGCuuu----UGGUcGCGUGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 5939 0.69 0.773711
Target:  5'- uUCCUCGcgcacauaaAGGGCCGGCGUcCCgGUCGCc -3'
miRNA:   3'- uAGGGGC---------UUUUGGUCGCGuGG-CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 139316 0.69 0.781141
Target:  5'- -gCCCCGcguccgcaucGCCGGCGC-CCG-CGCg -3'
miRNA:   3'- uaGGGGCuuu-------UGGUCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 147007 0.69 0.782986
Target:  5'- -gCCUCGggGACCcccgGGCGgGCCGggGCu -3'
miRNA:   3'- uaGGGGCuuUUGG----UCGCgUGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 84601 0.69 0.782986
Target:  5'- gGUCCCgGu--GCCGGUGCcccGCCGaagCGCg -3'
miRNA:   3'- -UAGGGgCuuuUGGUCGCG---UGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 53223 0.69 0.782986
Target:  5'- -aCCCCGGAGGggcuccUCAGCGCgGCCGUgGg -3'
miRNA:   3'- uaGGGGCUUUU------GGUCGCG-UGGCAgCg -5'
5504 5' -56.2 NC_001798.1 + 7342 0.69 0.782986
Target:  5'- uUCCCCGAGAGcCCAGgGaACCG-CGa -3'
miRNA:   3'- uAGGGGCUUUU-GGUCgCgUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 146878 0.68 0.792126
Target:  5'- -aCUCCGGAGAaggaaggcugcuCC-GCGCACCGgCGCg -3'
miRNA:   3'- uaGGGGCUUUU------------GGuCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 2437 0.68 0.792126
Target:  5'- -gCCCCGGcgGCUGGCGgCGCCaGcCGCc -3'
miRNA:   3'- uaGGGGCUuuUGGUCGC-GUGG-CaGCG- -5'
5504 5' -56.2 NC_001798.1 + 129679 0.68 0.792126
Target:  5'- gGUCaCCCGGGcGCCGGgGCcccaguACCGgcgCGCa -3'
miRNA:   3'- -UAG-GGGCUUuUGGUCgCG------UGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 46370 0.68 0.792126
Target:  5'- cUCgCCCGcguAGACCAGCgaucccccGCGCCGUCu- -3'
miRNA:   3'- uAG-GGGCu--UUUGGUCG--------CGUGGCAGcg -5'
5504 5' -56.2 NC_001798.1 + 97426 0.68 0.792126
Target:  5'- -gCCCCGAGcagugcGACgaggaGGCGCugCGcCGCg -3'
miRNA:   3'- uaGGGGCUU------UUGg----UCGCGugGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 27982 0.68 0.792126
Target:  5'- -gCCCCGGcgcuCCAGcCGUGCCG-CGCc -3'
miRNA:   3'- uaGGGGCUuuu-GGUC-GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 83899 0.68 0.792126
Target:  5'- -cUCCgGAAGAgUGGUGCGCCGcCGCc -3'
miRNA:   3'- uaGGGgCUUUUgGUCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 47777 0.68 0.798439
Target:  5'- aGUCCCgGGAuACCGcGCgaccgcgucguucgGCGuCCGUCGCg -3'
miRNA:   3'- -UAGGGgCUUuUGGU-CG--------------CGU-GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 52468 0.68 0.801122
Target:  5'- -aCCCUGAAAuacgcccugGCCugcggggacGCGCGCCGgCGCa -3'
miRNA:   3'- uaGGGGCUUU---------UGGu--------CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25423 0.68 0.801122
Target:  5'- -gCCUCGcuGGCCGcGCGCugCGcCGCc -3'
miRNA:   3'- uaGGGGCuuUUGGU-CGCGugGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 4114 0.68 0.809089
Target:  5'- -gCCCUGGGcgggcucGGCCGGgGCGCCGcccccggggcccUCGCg -3'
miRNA:   3'- uaGGGGCUU-------UUGGUCgCGUGGC------------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.