Results 141 - 160 of 237 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 152376 | 0.67 | 0.835501 |
Target: 5'- -cUCCCGccGGGCCGcCGCuCCGUCGCu -3' miRNA: 3'- uaGGGGCu-UUUGGUcGCGuGGCAGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 39411 | 0.67 | 0.835501 |
Target: 5'- -gCUCCG-GGACCggGGCGCGgCCGUcCGCg -3' miRNA: 3'- uaGGGGCuUUUGG--UCGCGU-GGCA-GCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 70582 | 0.67 | 0.842848 |
Target: 5'- -gCCCUGggGccggugcgcguccGCCAGUGUGCCGUgGa -3' miRNA: 3'- uaGGGGCuuU-------------UGGUCGCGUGGCAgCg -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 31130 | 0.67 | 0.843655 |
Target: 5'- -cCCCCGAAG---AGCGCcCCGgCGCg -3' miRNA: 3'- uaGGGGCUUUuggUCGCGuGGCaGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 152635 | 0.67 | 0.843655 |
Target: 5'- aGUCCCC-----CCGGCGCcccGCCGgCGCg -3' miRNA: 3'- -UAGGGGcuuuuGGUCGCG---UGGCaGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 102534 | 0.67 | 0.843655 |
Target: 5'- cGUCCCCGc-GGCCGGCagGCCGcaCGCg -3' miRNA: 3'- -UAGGGGCuuUUGGUCGcgUGGCa-GCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 27471 | 0.67 | 0.843655 |
Target: 5'- aGUCCCCGuccugccgcgcgGGGGCgGGCGCgggaaaaaaGCCG-CGCg -3' miRNA: 3'- -UAGGGGC------------UUUUGgUCGCG---------UGGCaGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 78226 | 0.67 | 0.843655 |
Target: 5'- gAUCgCCUGGAcGCCAuccgggccgacGUGCACCGggCGCu -3' miRNA: 3'- -UAG-GGGCUUuUGGU-----------CGCGUGGCa-GCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 131343 | 0.67 | 0.843655 |
Target: 5'- -gCCCCGGGcgcGACguCGGCGC-CCGgCGCg -3' miRNA: 3'- uaGGGGCUU---UUG--GUCGCGuGGCaGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 17805 | 0.67 | 0.843655 |
Target: 5'- -aCCCCG-GGAUgAGCGCuCCGuggaUCGCg -3' miRNA: 3'- uaGGGGCuUUUGgUCGCGuGGC----AGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 84777 | 0.67 | 0.846863 |
Target: 5'- --gCCCGGcguacgucaggagggAGGCCAGcCGCugCGUcCGCg -3' miRNA: 3'- uagGGGCU---------------UUUGGUC-GCGugGCA-GCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 101460 | 0.67 | 0.848455 |
Target: 5'- cUCCCCGugguagucuuCCGG-GCcuuCCGUCGCg -3' miRNA: 3'- uAGGGGCuuuu------GGUCgCGu--GGCAGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 88805 | 0.67 | 0.849248 |
Target: 5'- -aCUCCGc---CCAGCGCGCgucacguacgcgcgCGUCGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGCGUG--------------GCAGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 122469 | 0.67 | 0.850829 |
Target: 5'- -cCCCCGcgGcCCAGacggcgcUGCugCGUCGCu -3' miRNA: 3'- uaGGGGCuuUuGGUC-------GCGugGCAGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 64209 | 0.67 | 0.851616 |
Target: 5'- -aCCCCGA---UCGGaGCGCUGUUGCu -3' miRNA: 3'- uaGGGGCUuuuGGUCgCGUGGCAGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 154465 | 0.67 | 0.851616 |
Target: 5'- cUCCCCcGGAGCCGGCcGCuCCccCGCg -3' miRNA: 3'- uAGGGGcUUUUGGUCG-CGuGGcaGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 137980 | 0.67 | 0.851616 |
Target: 5'- -gCCCCc---GCCugGGCGCGCCGcagcUCGCg -3' miRNA: 3'- uaGGGGcuuuUGG--UCGCGUGGC----AGCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 117376 | 0.67 | 0.851616 |
Target: 5'- -aCCgCCGucgcGGCCAcGgGCACCGUcCGCa -3' miRNA: 3'- uaGG-GGCuu--UUGGU-CgCGUGGCA-GCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 75996 | 0.67 | 0.851616 |
Target: 5'- -gCCCCGGGcGCCGGCgGCAgggccCCGUgccCGCc -3' miRNA: 3'- uaGGGGCUUuUGGUCG-CGU-----GGCA---GCG- -5' |
|||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 35528 | 0.67 | 0.851616 |
Target: 5'- cUCUCCGccgcGGCCGGCGCGgggCGUUGCc -3' miRNA: 3'- uAGGGGCuu--UUGGUCGCGUg--GCAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home